Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   FOC73_RS07525 Genome accession   NZ_CP053998
Coordinates   1544070..1545029 (+) Length   319 a.a.
NCBI ID   WP_002885592.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1539070..1550029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS07515 (FOC73_07515) - 1539682..1540422 (-) 741 WP_002885593.1 CPBP family intramembrane glutamic endopeptidase -
  FOC73_RS07520 (FOC73_07520) - 1540832..1542769 (+) 1938 WP_002885509.1 GbpC/Spa domain-containing protein -
  FOC73_RS07525 (FOC73_07525) coiA 1544070..1545029 (+) 960 WP_002885592.1 competence protein CoiA Machinery gene
  FOC73_RS07530 (FOC73_07530) pepF 1545040..1546845 (+) 1806 WP_002885594.1 oligoendopeptidase F Regulator
  FOC73_RS07535 (FOC73_07535) - 1547058..1548278 (+) 1221 WP_002885504.1 OFA family MFS transporter -
  FOC73_RS07540 (FOC73_07540) - 1548350..1549057 (+) 708 WP_037605419.1 O-methyltransferase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 38023.73 Da        Isoelectric Point: 9.6031

>NTDB_id=396941 FOC73_RS07525 WP_002885592.1 1544070..1545029(+) (coiA) [Streptococcus salivarius strain FDAARGOS_771]
MLIAKNPEGKLVSALETELNREETYCCPGCQGRVLLRQGQVMCPHFAHKSLQDCQFFSENESAQHLSLKAALYKSLVNHG
EKVRIEKVLSEMGQIADLFVGDSLALEVQCSRLSQQRLRERTRSYHQAGYEVRWLLGEELWLNGRLTNLQRDFLYFTAKI
GFHLWELDWKKEEIRLKYLIYEDIFGRVYYLTKTWSLTENLMTVLRFPYQAERVETYQVTQRKKVSHVIQRELMGKNPRW
MRRQEAAYLKGMNLLSLSDQDFFPQVKFPESRQGFVQIRQSLEGFEKLFKQYYRKSHFSYRQTLYPPTFYAKIEKNRHN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=396941 FOC73_RS07525 WP_002885592.1 1544070..1545029(+) (coiA) [Streptococcus salivarius strain FDAARGOS_771]
ATGTTAATTGCAAAAAATCCGGAAGGGAAATTGGTTTCAGCACTTGAAACTGAGTTAAATCGCGAGGAAACTTATTGTTG
TCCAGGTTGTCAAGGTAGAGTCCTATTGAGGCAGGGGCAGGTAATGTGTCCGCATTTTGCTCATAAGTCTTTGCAAGATT
GTCAGTTCTTCTCGGAGAATGAATCGGCCCAACATTTATCCCTTAAGGCAGCCTTATATAAATCTTTGGTTAATCATGGT
GAAAAAGTACGTATTGAAAAGGTTTTGTCCGAGATGGGGCAAATTGCAGATTTATTTGTTGGCGATTCCCTGGCTCTGGA
AGTTCAGTGTTCTCGTTTATCTCAGCAACGTTTGAGAGAGAGGACACGCTCCTATCACCAAGCAGGTTATGAAGTGCGTT
GGCTTTTAGGTGAGGAACTCTGGTTGAATGGACGTTTAACAAACTTACAGCGGGACTTTCTCTATTTTACAGCTAAGATA
GGATTTCATCTATGGGAGCTTGATTGGAAGAAAGAGGAAATTAGACTTAAGTATCTTATCTATGAGGATATTTTTGGGAG
AGTTTATTACTTAACTAAGACTTGGTCTTTAACAGAGAATCTCATGACGGTTTTACGTTTTCCCTATCAAGCAGAGAGGG
TTGAGACCTATCAAGTGACTCAGCGAAAGAAAGTCTCACATGTGATTCAACGGGAATTAATGGGGAAAAATCCAAGATGG
ATGAGAAGGCAGGAGGCGGCTTATCTTAAGGGGATGAATTTGTTAAGTCTGTCTGATCAGGATTTTTTCCCACAAGTAAA
ATTTCCTGAATCTAGGCAGGGTTTTGTACAAATTAGACAGTCACTTGAAGGTTTTGAAAAGCTTTTTAAGCAATATTATC
GAAAAAGTCATTTTTCTTATCGACAAACTCTCTACCCTCCCACCTTTTATGCTAAAATAGAAAAGAATAGACACAATTAA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(3-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae Rx1

44.695

97.492

0.436
  coiA Streptococcus pneumoniae D39

44.695

97.492

0.436
  coiA Streptococcus pneumoniae R6

44.695

97.492

0.436
  coiA Streptococcus pneumoniae TIGR4

44.695

97.492

0.436
  coiA Streptococcus mitis NCTC 12261

44.373

97.492

0.433
  coiA Lactococcus lactis subsp. cremoris KW2

36.061

100

0.373