Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   FOC73_RS07115 Genome accession   NZ_CP053998
Coordinates   1462521..1463183 (+) Length   220 a.a.
NCBI ID   WP_002883740.1    Uniprot ID   -
Organism   Streptococcus salivarius strain FDAARGOS_771     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1457521..1468183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC73_RS07090 (FOC73_07090) - 1457829..1458539 (+) 711 WP_002883761.1 ABC transporter ATP-binding protein -
  FOC73_RS07095 (FOC73_07095) - 1458674..1459333 (+) 660 WP_002883751.1 CBS and ACT domain-containing protein -
  FOC73_RS07100 (FOC73_07100) cysK 1459512..1460438 (-) 927 WP_002883742.1 cysteine synthase A -
  FOC73_RS07105 (FOC73_07105) - 1460540..1461166 (-) 627 WP_002883729.1 YigZ family protein -
  FOC73_RS07110 (FOC73_07110) comFA/cflA 1461221..1462540 (+) 1320 WP_002883821.1 DEAD/DEAH box helicase Machinery gene
  FOC73_RS07115 (FOC73_07115) comFC/cflB 1462521..1463183 (+) 663 WP_002883740.1 ComF family protein Machinery gene
  FOC73_RS07120 (FOC73_07120) raiA 1463262..1463810 (+) 549 WP_002883786.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 26191.45 Da        Isoelectric Point: 8.7453

>NTDB_id=396936 FOC73_RS07115 WP_002883740.1 1462521..1463183(+) (comFC/cflB) [Streptococcus salivarius strain FDAARGOS_771]
MKCLLCNDWIESVPKLRDLITFNQREEYSCVSCKNQFKKLSKERCQNCNKELHRDTCIDCKLWMKKGYIPKHLAIYRYEE
NMKDYFSRYKFMGDYCLRKTFQKDIKNNLKRFFKKGYTIVPVPLSEERLVERGFNQVEGLIEGIPYQDIFEKRDIEKQSS
KTREERLSQDNAFCLKKGIDVPDKIIIVDDIYTTGSTLYHMVQLLEAIGIKEVLTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=396936 FOC73_RS07115 WP_002883740.1 1462521..1463183(+) (comFC/cflB) [Streptococcus salivarius strain FDAARGOS_771]
ATGAAGTGTCTACTATGTAATGACTGGATTGAATCAGTGCCAAAATTAAGAGACCTGATTACGTTTAACCAAAGAGAAGA
GTACTCCTGCGTATCTTGTAAAAATCAGTTTAAAAAACTTTCAAAAGAAAGATGTCAAAATTGTAATAAGGAGTTACATA
GAGATACCTGTATTGATTGTAAACTTTGGATGAAAAAAGGCTATATTCCTAAGCACCTTGCCATTTATCGCTATGAAGAA
AACATGAAAGATTATTTTAGCCGCTATAAATTTATGGGAGACTATTGTCTTAGAAAAACATTTCAAAAAGATATAAAAAA
TAATTTAAAACGATTTTTTAAAAAAGGTTATACCATAGTGCCGGTCCCATTGTCGGAAGAACGCTTGGTAGAAAGAGGGT
TCAACCAAGTTGAGGGATTAATAGAGGGAATTCCCTATCAGGATATCTTTGAGAAAAGAGATATTGAGAAGCAATCATCG
AAAACACGTGAGGAGCGTTTAAGTCAAGATAATGCCTTCTGTCTCAAGAAAGGTATAGATGTACCAGATAAGATTATTAT
AGTGGATGATATCTATACAACAGGATCCACTTTATATCATATGGTTCAACTATTAGAAGCTATAGGTATTAAAGAAGTTT
TGACCTTTTCACTAGCTAGATAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(176-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45.495

100

0.459
  comFC/cflB Streptococcus mitis SK321

45.045

100

0.455
  comFC/cflB Streptococcus pneumoniae Rx1

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae D39

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae R6

44.595

100

0.45
  comFC/cflB Streptococcus pneumoniae TIGR4

44.595

100

0.45