Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GH742_RS10585 Genome accession   NZ_CP045732
Coordinates   2292821..2293345 (-) Length   174 a.a.
NCBI ID   WP_203454934.1    Uniprot ID   -
Organism   Legionella sp. MW5194     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2287821..2298345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH742_RS10570 (GH742_10520) aroB 2288963..2290090 (-) 1128 WP_203454932.1 3-dehydroquinate synthase -
  GH742_RS10575 (GH742_10525) aroK 2290077..2290604 (-) 528 WP_058527208.1 shikimate kinase AroK -
  GH742_RS10580 (GH742_10530) pilQ 2290676..2292811 (-) 2136 WP_203454933.1 type IV pilus secretin PilQ Machinery gene
  GH742_RS10585 (GH742_10535) pilP 2292821..2293345 (-) 525 WP_203454934.1 pilus assembly protein PilP Machinery gene
  GH742_RS10590 (GH742_10540) pilO 2293342..2293959 (-) 618 WP_203454935.1 type 4a pilus biogenesis protein PilO Machinery gene
  GH742_RS10595 (GH742_10545) pilN 2293956..2294588 (-) 633 WP_203454936.1 PilN domain-containing protein Machinery gene
  GH742_RS10600 (GH742_10550) pilM 2294593..2295657 (-) 1065 WP_203454937.1 pilus assembly protein PilM Machinery gene
  GH742_RS10605 (GH742_10555) - 2296023..2297237 (+) 1215 WP_203454938.1 hypothetical protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19288.33 Da        Isoelectric Point: 10.1211

>NTDB_id=396443 GH742_RS10585 WP_203454934.1 2292821..2293345(-) (pilP) [Legionella sp. MW5194]
MTVKRSVLHNAVLLSLAALLAGCTSSADSELTRYINEVKSRPGRPIEPIPQVAPLPKFTYPEVDGRRSPFKPKEIKTANE
DKLAPNTNRPKQPLEQYPLDSLKFVGVLKENATVWGLISKPDGEIVRVKPGDYMGQNFGKVISISNELLKLEETTQIAGK
WKKQITTINLNAPQ

Nucleotide


Download         Length: 525 bp        

>NTDB_id=396443 GH742_RS10585 WP_203454934.1 2292821..2293345(-) (pilP) [Legionella sp. MW5194]
ATGACCGTCAAGCGAAGCGTATTGCACAATGCCGTTCTGTTAAGCCTGGCTGCTCTTCTGGCCGGCTGTACCTCATCGGC
TGATTCAGAATTGACGCGCTACATCAATGAAGTCAAATCAAGGCCTGGCCGACCCATTGAACCCATTCCTCAGGTGGCGC
CGCTGCCCAAATTTACCTATCCCGAAGTGGATGGCCGCCGCAGCCCGTTTAAACCGAAAGAAATCAAGACGGCGAACGAA
GACAAGCTCGCCCCTAACACCAATCGTCCCAAACAACCCCTGGAACAGTACCCACTGGATTCCTTGAAATTTGTTGGGGT
ACTAAAAGAAAATGCGACTGTCTGGGGTTTGATCAGTAAACCCGATGGCGAAATTGTGCGGGTTAAACCCGGCGATTACA
TGGGGCAGAATTTTGGTAAAGTCATCAGCATCAGCAATGAATTATTGAAATTGGAAGAGACAACACAAATTGCAGGGAAG
TGGAAGAAACAAATCACCACGATTAATTTAAACGCGCCTCAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(30-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

61.184

87.356

0.534

Multiple sequence alignment