Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   GH742_RS04510 Genome accession   NZ_CP045732
Coordinates   946425..947114 (-) Length   229 a.a.
NCBI ID   WP_239005279.1    Uniprot ID   -
Organism   Legionella sp. MW5194     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 941425..952114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GH742_RS04485 (GH742_04470) prmC 941721..942569 (-) 849 WP_203456281.1 peptide chain release factor N(5)-glutamine methyltransferase -
  GH742_RS04490 (GH742_04475) prfA 942556..943650 (-) 1095 WP_203456282.1 peptide chain release factor 1 -
  GH742_RS04495 (GH742_04480) hemA 943634..944908 (-) 1275 WP_203456283.1 glutamyl-tRNA reductase -
  GH742_RS04500 (GH742_04485) - 945066..945344 (+) 279 WP_108292292.1 hypothetical protein -
  GH742_RS04505 (GH742_04490) - 945354..946424 (+) 1071 WP_203456284.1 RIP metalloprotease -
  GH742_RS04510 (GH742_04495) comFC 946425..947114 (-) 690 WP_239005279.1 ComF family protein Machinery gene
  GH742_RS04515 (GH742_04500) bioC 947150..948007 (+) 858 WP_203456285.1 malonyl-ACP O-methyltransferase BioC -
  GH742_RS04520 (GH742_04505) - 948115..949338 (+) 1224 WP_203456286.1 sterol desaturase family protein -
  GH742_RS04525 (GH742_04510) phhA 949412..950230 (+) 819 WP_203456287.1 phenylalanine 4-monooxygenase -
  GH742_RS04530 (GH742_04515) letA 950357..951016 (+) 660 WP_058525608.1 two-component system response regulator LetA Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26054.53 Da        Isoelectric Point: 9.8517

>NTDB_id=396426 GH742_RS04510 WP_239005279.1 946425..947114(-) (comFC) [Legionella sp. MW5194]
MYQKIKSITQQWRLPSVCVVCCQNHYGLYAVCSFCEQLLTPLGPACRYCRHPLVESAFPVCGHCVKKRPDFDAVFTAYHF
NSLLRSLLHDYKYRHALHLRSFLVKLMKAALPEHYRSDCLTPVPLHAQRLRQRGFNQTAELAKRLASELLIPCALTHCHK
RINTPTQAGLSGRQRRKNLKQSFSVKPMPYAHVTLVDDLLTTGSTVSELARGLKQHGVQRVDVLCCARA

Nucleotide


Download         Length: 690 bp        

>NTDB_id=396426 GH742_RS04510 WP_239005279.1 946425..947114(-) (comFC) [Legionella sp. MW5194]
GTGTATCAGAAAATCAAGAGTATAACACAGCAATGGCGATTGCCTTCTGTTTGTGTGGTTTGCTGTCAAAACCATTATGG
CCTGTATGCTGTATGTTCGTTTTGCGAACAATTGTTAACCCCGCTTGGGCCCGCTTGCCGCTATTGCCGGCATCCCCTGG
TTGAGTCCGCCTTCCCTGTGTGCGGCCATTGCGTTAAAAAAAGACCCGACTTTGATGCCGTGTTCACTGCTTATCACTTT
AACAGCCTGTTACGCAGCCTGCTGCATGACTACAAATACCGCCACGCACTGCATCTTCGATCCTTTTTAGTCAAATTAAT
GAAAGCAGCCCTGCCTGAACACTACCGTTCCGATTGCCTGACTCCAGTCCCTCTTCATGCCCAGCGTTTGCGGCAACGCG
GGTTTAATCAGACGGCGGAACTAGCCAAAAGGCTGGCGAGCGAGTTATTGATTCCCTGCGCGCTTACCCATTGCCACAAG
CGAATCAATACGCCAACGCAGGCAGGACTCAGTGGCCGGCAACGCCGCAAAAACCTGAAGCAATCCTTCTCGGTTAAACC
CATGCCCTATGCTCATGTGACGCTGGTCGATGATTTACTCACCACAGGCAGCACGGTCAGTGAACTTGCGCGCGGCTTAA
AACAGCACGGAGTACAACGCGTGGATGTGCTCTGCTGCGCCCGGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

53.478

100

0.537
  comFC Legionella pneumophila strain ERS1305867

54.497

82.533

0.45

Multiple sequence alignment