Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | GFU70_RS24345 | Genome accession | NZ_CP045701 |
| Coordinates | 5622399..5623268 (+) | Length | 289 a.a. |
| NCBI ID | WP_153388915.1 | Uniprot ID | - |
| Organism | Pseudomonas brassicacearum strain S-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5617399..5628268
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFU70_RS24320 (GFU70_24315) | - | 5617593..5617889 (+) | 297 | WP_058542683.1 | DUF2845 domain-containing protein | - |
| GFU70_RS24325 (GFU70_24320) | - | 5618214..5618567 (-) | 354 | WP_058542682.1 | BON domain-containing protein | - |
| GFU70_RS24330 (GFU70_24325) | - | 5618841..5619251 (-) | 411 | WP_058542685.1 | pilin | - |
| GFU70_RS24335 (GFU70_24330) | pilB | 5619477..5621177 (+) | 1701 | WP_058542681.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GFU70_RS24340 (GFU70_24335) | pilC | 5621180..5622397 (+) | 1218 | WP_058542680.1 | type II secretion system F family protein | Machinery gene |
| GFU70_RS24345 (GFU70_24340) | pilD | 5622399..5623268 (+) | 870 | WP_153388915.1 | prepilin peptidase | Machinery gene |
| GFU70_RS24350 (GFU70_24345) | coaE | 5623268..5623891 (+) | 624 | WP_058542678.1 | dephospho-CoA kinase | - |
| GFU70_RS24355 (GFU70_24350) | yacG | 5623888..5624088 (+) | 201 | WP_058542677.1 | DNA gyrase inhibitor YacG | - |
| GFU70_RS24360 (GFU70_24355) | - | 5624274..5624489 (-) | 216 | WP_013694234.1 | hypothetical protein | - |
| GFU70_RS24365 (GFU70_24360) | - | 5624553..5625239 (-) | 687 | WP_058542676.1 | energy-coupling factor ABC transporter permease | - |
| GFU70_RS24370 (GFU70_24365) | - | 5625383..5626009 (+) | 627 | WP_003205682.1 | DUF1780 domain-containing protein | - |
| GFU70_RS24375 (GFU70_24370) | - | 5626006..5626533 (+) | 528 | WP_153388916.1 | MOSC domain-containing protein | - |
| GFU70_RS24380 (GFU70_24375) | - | 5626586..5626759 (+) | 174 | WP_003205686.1 | DUF3094 domain-containing protein | - |
| GFU70_RS24385 (GFU70_24380) | - | 5626829..5628127 (+) | 1299 | WP_058542674.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31869.01 Da Isoelectric Point: 8.0578
>NTDB_id=396110 GFU70_RS24345 WP_153388915.1 5622399..5623268(+) (pilD) [Pseudomonas brassicacearum strain S-1]
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHDLLGLPAEPPGPVYNLMLPHSQCPHCGHRIR
AWENIPVLSYLMLRGRCSSCAAPIGRRYPLTEVACGALSAFVAWHFGFGWHAAVVMVLTWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVLGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
MPLSEFFVLYPLAFVLVAALLGLIIGSFLNVLVWRLPKMLNREWRLQAHDLLGLPAEPPGPVYNLMLPHSQCPHCGHRIR
AWENIPVLSYLMLRGRCSSCAAPIGRRYPLTEVACGALSAFVAWHFGFGWHAAVVMVLTWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVLGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWQSVGF
Nucleotide
Download Length: 870 bp
>NTDB_id=396110 GFU70_RS24345 WP_153388915.1 5622399..5623268(+) (pilD) [Pseudomonas brassicacearum strain S-1]
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCAGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAGGCCCACGACCTGCTGGGCC
TGCCGGCCGAACCCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCACACTGCGGTCATCGCATCCGC
GCCTGGGAGAACATCCCCGTACTCAGCTACTTGATGCTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATTGGCAGGCG
TTACCCCCTGACCGAAGTGGCCTGCGGGGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCACGCCGCGG
TGGTGATGGTGTTGACCTGGGGCCTGCTGGGCATGAGCCTGATCGACGCCGAACATCAATTGCTGCCCGATACCCTGGTG
CTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGCTGTTCGTGTCCTTGAACCAGGCAATGTGGGGTGCGGT
GGCCGGCTATCTGGCGCTGTGGTCGGTTTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGCGATT
TCAAGCTGCTGGCGATGCTTGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGTTGTCGTCGCTGGTGGGT
GCCGTTCTTGGGGTGATTGTACTGCGCTTGCGTGATGCTCCCGGGTCGACGCAGATCCCTTTCGGGCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA
ATGCCCCTGAGCGAATTCTTCGTGCTGTATCCCCTGGCTTTCGTGCTCGTTGCAGCATTGCTCGGCCTGATCATCGGCAG
CTTCCTCAACGTGCTGGTGTGGCGCCTGCCGAAGATGCTCAACCGCGAATGGCGCCTGCAGGCCCACGACCTGCTGGGCC
TGCCGGCCGAACCCCCGGGCCCGGTCTACAACCTGATGCTGCCCCACTCCCAGTGCCCACACTGCGGTCATCGCATCCGC
GCCTGGGAGAACATCCCCGTACTCAGCTACTTGATGCTGCGCGGCCGCTGTTCGAGCTGCGCCGCGCCCATTGGCAGGCG
TTACCCCCTGACCGAAGTGGCCTGCGGGGCGTTATCGGCGTTCGTCGCCTGGCATTTCGGCTTTGGCTGGCACGCCGCGG
TGGTGATGGTGTTGACCTGGGGCCTGCTGGGCATGAGCCTGATCGACGCCGAACATCAATTGCTGCCCGATACCCTGGTG
CTGCCGTTGTTGTGGCTGGGCTTGATCGTCAACAGCTTCGGGCTGTTCGTGTCCTTGAACCAGGCAATGTGGGGTGCGGT
GGCCGGCTATCTGGCGCTGTGGTCGGTTTTCTGGGTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTATGGCGATT
TCAAGCTGCTGGCGATGCTTGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGCTGTTGTCGTCGCTGGTGGGT
GCCGTTCTTGGGGTGATTGTACTGCGCTTGCGTGATGCTCCCGGGTCGACGCAGATCCCTTTCGGGCCTTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.113 |
98.27 |
0.512 |
| pilD | Vibrio campbellii strain DS40M4 |
51.228 |
98.616 |
0.505 |
| pilD | Acinetobacter baumannii D1279779 |
48.214 |
96.886 |
0.467 |
| pilD | Neisseria gonorrhoeae MS11 |
47.038 |
99.308 |
0.467 |
| pilD | Acinetobacter nosocomialis M2 |
47.5 |
96.886 |
0.46 |