Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GFB47_RS10785 Genome accession   NZ_CP045699
Coordinates   2352647..2353165 (+) Length   172 a.a.
NCBI ID   WP_225874271.1    Uniprot ID   -
Organism   Vibrio algicola strain SM1977     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2347647..2358165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB47_RS10770 (GFB47_10750) glpK 2348369..2349868 (-) 1500 WP_153447963.1 glycerol kinase GlpK -
  GFB47_RS10775 (GFB47_10755) glpD 2349955..2351481 (+) 1527 WP_153447964.1 glycerol-3-phosphate dehydrogenase -
  GFB47_RS10780 (GFB47_10760) bioH 2351532..2352296 (-) 765 WP_153447965.1 pimeloyl-ACP methyl ester esterase BioH -
  GFB47_RS16570 - 2352324..2352479 (+) 156 WP_225874270.1 hypothetical protein -
  GFB47_RS10785 (GFB47_10765) comF 2352647..2353165 (+) 519 WP_225874271.1 ComF family protein Machinery gene
  GFB47_RS10790 (GFB47_10770) nfuA 2353355..2353948 (+) 594 WP_153447967.1 Fe-S biogenesis protein NfuA -
  GFB47_RS10795 (GFB47_10775) cybB 2354471..2354995 (+) 525 WP_153447968.1 cytochrome b561 -
  GFB47_RS10800 (GFB47_10780) cysQ 2355146..2355973 (-) 828 WP_153447969.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  GFB47_RS10805 (GFB47_10785) nudE 2355975..2356529 (-) 555 WP_153447970.1 ADP compounds hydrolase NudE -
  GFB47_RS10810 (GFB47_10790) - 2356649..2357422 (-) 774 WP_178306474.1 type II secretion system protein N -
  GFB47_RS10815 (GFB47_10795) - 2357425..2357937 (-) 513 WP_153447971.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 20030.22 Da        Isoelectric Point: 10.5237

>NTDB_id=396087 GFB47_RS10785 WP_225874271.1 2352647..2353165(+) (comF) [Vibrio algicola strain SM1977]
MDPPAWDRLYCVNNYQFPLSKSVQDFKYHGQFWLAYDLATLLKAQIPQPAPECIAVPLHWRRLLSRGFNQSRSLAFQLVS
QWQQQGENVSLNNQVFRRRYATIQQKGLNKKQRRKNLRGAFVLRQIPKYKHVAIIDDVVTTGSTLTPLCQALRKAGVERI
DIYCLCRTPEPK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=396087 GFB47_RS10785 WP_225874271.1 2352647..2353165(+) (comF) [Vibrio algicola strain SM1977]
GTGGATCCTCCCGCCTGGGATCGCTTATATTGTGTCAATAACTATCAATTCCCACTCAGCAAAAGTGTACAAGATTTTAA
ATATCACGGTCAGTTTTGGTTGGCTTACGATTTAGCGACTCTGTTAAAAGCGCAAATCCCCCAGCCCGCGCCAGAATGCA
TTGCGGTGCCTTTACATTGGCGACGATTATTATCACGAGGTTTCAATCAAAGCCGATCATTGGCGTTTCAATTAGTGAGT
CAATGGCAGCAGCAAGGGGAAAATGTCAGCCTTAATAATCAGGTTTTTCGCCGTCGCTATGCCACCATTCAACAAAAAGG
GCTGAATAAGAAACAACGGCGTAAAAATTTACGCGGCGCTTTTGTATTGCGTCAAATTCCTAAGTATAAGCATGTTGCCA
TTATTGATGATGTGGTCACCACCGGCAGTACTCTGACGCCTTTATGCCAAGCATTGCGCAAGGCGGGAGTGGAAAGAATT
GATATCTATTGCTTATGTCGCACACCGGAACCTAAGTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(109-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.882

98.837

0.552
  comF Vibrio campbellii strain DS40M4

50.588

98.837

0.5
  comF Haemophilus influenzae Rd KW20

40.678

100

0.419
  comF Haemophilus influenzae 86-028NP

39.548

100

0.407
  comFC Legionella pneumophila strain ERS1305867

38.69

97.674

0.378
  comFC Legionella pneumophila str. Paris

38.69

97.674

0.378

Multiple sequence alignment