Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | GFB47_RS07425 | Genome accession | NZ_CP045699 |
| Coordinates | 1614372..1614668 (-) | Length | 98 a.a. |
| NCBI ID | WP_153447405.1 | Uniprot ID | A0A5Q0TGF9 |
| Organism | Vibrio algicola strain SM1977 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1609372..1619668
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFB47_RS07400 (GFB47_07385) | - | 1609775..1610770 (-) | 996 | WP_153447401.1 | alpha/beta fold hydrolase | - |
| GFB47_RS07405 (GFB47_07390) | - | 1610770..1611921 (-) | 1152 | WP_153447402.1 | BamA/TamA family outer membrane protein | - |
| GFB47_RS07410 (GFB47_07395) | - | 1611925..1612938 (-) | 1014 | WP_153447403.1 | hypothetical protein | - |
| GFB47_RS07415 (GFB47_07400) | - | 1613063..1613737 (-) | 675 | WP_153447404.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| GFB47_RS07420 (GFB47_07405) | rrtA | 1613782..1614318 (+) | 537 | WP_225874251.1 | rhombosortase | - |
| GFB47_RS07425 (GFB47_07410) | comEA | 1614372..1614668 (-) | 297 | WP_153447405.1 | ComEA family DNA-binding protein | Machinery gene |
| GFB47_RS16565 | - | 1614855..1615046 (-) | 192 | WP_225874252.1 | hypothetical protein | - |
| GFB47_RS07430 (GFB47_07415) | - | 1615080..1616042 (-) | 963 | WP_225874253.1 | OmpP1/FadL family transporter | - |
| GFB47_RS07435 (GFB47_07420) | ppiD | 1616261..1618120 (-) | 1860 | WP_153447406.1 | peptidylprolyl isomerase | - |
| GFB47_RS07440 (GFB47_07425) | - | 1618291..1618566 (-) | 276 | WP_153447407.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 10785.59 Da Isoelectric Point: 6.9802
>NTDB_id=396077 GFB47_RS07425 WP_153447405.1 1614372..1614668(-) (comEA) [Vibrio algicola strain SM1977]
MRILRSLCLLLMVTFLPMGVAVAADTDAQHEGIEITVNVNTADANEIATMLKGIGEKKAQQIVDFRTENGKFKDLESLKQ
VKGIGQSTIDKNKDRILL
MRILRSLCLLLMVTFLPMGVAVAADTDAQHEGIEITVNVNTADANEIATMLKGIGEKKAQQIVDFRTENGKFKDLESLKQ
VKGIGQSTIDKNKDRILL
Nucleotide
Download Length: 297 bp
>NTDB_id=396077 GFB47_RS07425 WP_153447405.1 1614372..1614668(-) (comEA) [Vibrio algicola strain SM1977]
ATGCGAATTTTACGCAGTTTATGTTTATTATTGATGGTCACTTTTTTACCTATGGGGGTTGCGGTGGCTGCGGATACCGA
CGCTCAACACGAAGGGATCGAGATTACGGTCAATGTTAATACTGCCGATGCTAATGAAATAGCCACAATGCTCAAAGGTA
TTGGTGAGAAAAAAGCGCAACAGATCGTTGACTTTCGGACTGAAAATGGAAAATTTAAAGATCTGGAATCGTTAAAGCAA
GTCAAAGGGATCGGGCAATCGACCATTGATAAAAACAAAGACCGCATTTTGCTGTAG
ATGCGAATTTTACGCAGTTTATGTTTATTATTGATGGTCACTTTTTTACCTATGGGGGTTGCGGTGGCTGCGGATACCGA
CGCTCAACACGAAGGGATCGAGATTACGGTCAATGTTAATACTGCCGATGCTAATGAAATAGCCACAATGCTCAAAGGTA
TTGGTGAGAAAAAAGCGCAACAGATCGTTGACTTTCGGACTGAAAATGGAAAATTTAAAGATCTGGAATCGTTAAAGCAA
GTCAAAGGGATCGGGCAATCGACCATTGATAAAAACAAAGACCGCATTTTGCTGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
63.636 |
100 |
0.643 |
| comEA | Vibrio campbellii strain DS40M4 |
55.102 |
100 |
0.551 |
| comEA | Vibrio cholerae C6706 |
53.125 |
97.959 |
0.52 |
| comEA | Vibrio cholerae strain A1552 |
53.125 |
97.959 |
0.52 |