Detailed information NTG0395926

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GFH30_RS12030
• Genome accession: NZ_CP045650
• Coordinates: 2513549..2514409 (+)
• Length: 286 a.a.
• NCBI ID: WP_153372899.1
• Uniprot ID: -
• Organism: Acinetobacter wanghuae strain dk386
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2508549..2519409

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GFH30_RS12010 (GFH30_12005)	secG	2509167..2509496 (-)	330	WP_153372892.1	preprotein translocase subunit SecG	-
GFH30_RS12015 (GFH30_12010)	tpiA	2509510..2510301 (-)	792	WP_153372894.1	triose-phosphate isomerase	-
GFH30_RS12020 (GFH30_12015)	pilB	2510581..2512287 (+)	1707	WP_153372896.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GFH30_RS12025 (GFH30_12020)	pilC	2512320..2513549 (+)	1230	WP_153372898.1	type II secretion system F family protein	Machinery gene
GFH30_RS12030 (GFH30_12025)	pilD	2513549..2514409 (+)	861	WP_153372899.1	A24 family peptidase	Machinery gene
GFH30_RS12035 (GFH30_12030)	coaE	2514411..2515010 (+)	600	WP_153372901.1	dephospho-CoA kinase	-
GFH30_RS12040 (GFH30_12035)	-	2515028..2515948 (-)	921	WP_153372903.1	DMT family transporter	-
GFH30_RS12045 (GFH30_12040)	rlmB	2515987..2516736 (-)	750	WP_153372905.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
GFH30_RS12050 (GFH30_12045)	-	2516876..2517199 (-)	324	WP_153372907.1	pyrimidine/purine nucleoside phosphorylase	-
GFH30_RS12055 (GFH30_12050)	recN	2517657..2519318 (+)	1662	WP_153372922.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32150.59 Da
• Isoelectric Point: 8.0682

>NTDB_id=395926 GFH30_RS12030 WP_153372899.1 2513549..2514409(+) (pilD) [Acinetobacter wanghuae strain dk386]
MHDLLLYLTQTPTALYLVVGIFSLCIGSFLNVVIYRTPKMMEQEWRIDCQLFLHPEHPIIDEAKLSLSKPNSTCPKCHNP
IRWYQNIPVISWLVLRGKCGNCQNPISIRYPFIEALTAVCSLIVVAVFGPTLQMLFGLILTYVLIALTFIDFDSQLLPDR
YTLPLAALGLGINSYAIYTTPTMSIWGYIIGFLCLWVVYYLFKIITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=395926 GFH30_RS12030 WP_153372899.1 2513549..2514409(+) (pilD) [Acinetobacter wanghuae strain dk386]
ATGCACGATTTACTCTTATATTTAACACAAACCCCAACTGCTCTGTATCTTGTGGTTGGGATTTTTAGTTTATGTATCGG
CAGCTTTTTAAATGTCGTGATTTACCGCACACCGAAGATGATGGAGCAAGAATGGCGTATCGATTGTCAGCTGTTTTTGC
ATCCTGAACACCCCATTATTGATGAAGCCAAACTGAGTTTAAGCAAACCGAACTCTACCTGTCCAAAATGTCACAACCCA
ATTCGTTGGTATCAAAATATTCCGGTGATCAGTTGGTTAGTTCTACGTGGGAAATGTGGAAATTGTCAAAATCCGATTAG
TATACGTTATCCATTCATTGAAGCTTTAACTGCAGTCTGCTCACTGATTGTCGTGGCGGTATTTGGTCCTACGCTTCAAA
TGCTGTTTGGCTTGATCCTCACTTATGTATTGATTGCACTCACCTTTATTGATTTTGATAGTCAGCTACTGCCTGATCGC
TATACCCTTCCTCTTGCTGCACTTGGTTTAGGTATTAATAGCTATGCCATTTACACCACACCCACTATGTCAATTTGGGG
ATATATCATCGGCTTCTTATGCCTGTGGGTTGTGTATTACCTGTTTAAAATTATTACCGGCAAAGAAGGCATGGGCTATG
GTGATTTCAAACTCTTAGCTGCATTAGGTGCATGGATGGGACCGCTCATGCTGCCCCTTATCGTGCTGTTATCTTCTTTG
GTTGGGGCAATTATTGGGATTATTTTACTCAAAGTCCGTAAAGAAAATCAGCCTTTTGCATTCGGTCCTTATATCGCGAT
TGCAGGTTGGATTGCCTTTCTTTGGGGCGAACAAATTATGAAAGTTTATTTAGGACAATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	78.947	99.65	0.787
pilD	Acinetobacter baumannii D1279779	78.596	99.65	0.783
pilD	Vibrio campbellii strain DS40M4	54.478	93.706	0.51
pilD	Vibrio cholerae strain A1552	53.731	93.706	0.503
pilD	Neisseria gonorrhoeae MS11	46.241	93.007	0.43