Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   GFM36_RS18585 Genome accession   NZ_CP045645
Coordinates   3819972..3820790 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain XH1056     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3814972..3825790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFM36_RS18570 (GFM36_18645) pilE 3815189..3815614 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  GFM36_RS18575 (GFM36_18650) pilY2 3815611..3816093 (-) 483 WP_020753490.1 type IV pilin protein Machinery gene
  GFM36_RS18580 (GFM36_18655) pilY1 3816106..3819960 (-) 3855 WP_020753491.1 PilC/PilY family type IV pilus protein Machinery gene
  GFM36_RS18585 (GFM36_18660) pilX 3819972..3820790 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GFM36_RS18590 (GFM36_18665) pilW 3820787..3821788 (-) 1002 WP_000079199.1 PilW family protein Machinery gene
  GFM36_RS18595 (GFM36_18670) pilV 3821789..3822349 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  GFM36_RS18600 (GFM36_18675) fimU 3822343..3822816 (-) 474 WP_001214068.1 GspH/FimT family pseudopilin Machinery gene
  GFM36_RS18605 (GFM36_18680) ispH 3822986..3823936 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GFM36_RS18610 (GFM36_18685) gmk 3824059..3824688 (+) 630 WP_000015937.1 guanylate kinase -
  GFM36_RS18615 (GFM36_18690) rpoZ 3824761..3825039 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  GFM36_RS18620 (GFM36_18695) - 3825078..3825208 (+) 131 Protein_3629 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=395838 GFM36_RS18585 WP_000149374.1 3819972..3820790(-) (pilX) [Acinetobacter baumannii strain XH1056]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=395838 GFM36_RS18585 WP_000149374.1 3819972..3820790(-) (pilX) [Acinetobacter baumannii strain XH1056]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCTTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment