Detailed information
Bioinformatically predicted
Overview
| Name | fimU | Type | Machinery gene |
| Locus tag | GFM36_RS18600 | Genome accession | NZ_CP045645 |
| Coordinates | 3822343..3822816 (-) | Length | 157 a.a. |
| NCBI ID | WP_001214068.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain XH1056 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3817343..3827816
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFM36_RS18585 (GFM36_18660) | pilX | 3819972..3820790 (-) | 819 | WP_000149374.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| GFM36_RS18590 (GFM36_18665) | pilW | 3820787..3821788 (-) | 1002 | WP_000079199.1 | PilW family protein | Machinery gene |
| GFM36_RS18595 (GFM36_18670) | pilV | 3821789..3822349 (-) | 561 | WP_002194578.1 | type IV pilus modification protein PilV | Machinery gene |
| GFM36_RS18600 (GFM36_18675) | fimU | 3822343..3822816 (-) | 474 | WP_001214068.1 | GspH/FimT family pseudopilin | Machinery gene |
| GFM36_RS18605 (GFM36_18680) | ispH | 3822986..3823936 (-) | 951 | WP_000407064.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| GFM36_RS18610 (GFM36_18685) | gmk | 3824059..3824688 (+) | 630 | WP_000015937.1 | guanylate kinase | - |
| GFM36_RS18615 (GFM36_18690) | rpoZ | 3824761..3825039 (+) | 279 | WP_000135049.1 | DNA-directed RNA polymerase subunit omega | - |
| GFM36_RS18620 (GFM36_18695) | - | 3825078..3825208 (+) | 131 | Protein_3629 | hypothetical protein | - |
| GFM36_RS18625 (GFM36_18700) | - | 3825248..3827353 (+) | 2106 | WP_020753492.1 | HD domain-containing protein | - |
Sequence
Protein
Download Length: 157 a.a. Molecular weight: 16851.46 Da Isoelectric Point: 8.5355
>NTDB_id=395841 GFM36_RS18600 WP_001214068.1 3822343..3822816(-) (fimU) [Acinetobacter baumannii strain XH1056]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLEANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC
Nucleotide
Download Length: 474 bp
>NTDB_id=395841 GFM36_RS18600 WP_001214068.1 3822343..3822816(-) (fimU) [Acinetobacter baumannii strain XH1056]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGAGGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAATTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGACGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTTATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimU | Acinetobacter baumannii D1279779 |
99.363 |
100 |
0.994 |