Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GFK26_RS05025 Genome accession   NZ_CP045644
Coordinates   1119210..1119764 (-) Length   184 a.a.
NCBI ID   WP_153281045.1    Uniprot ID   A0A5Q0LYB3
Organism   Variovorax paradoxus strain 5C-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1114210..1124764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFK26_RS05000 (GFK26_05020) - 1114467..1115072 (-) 606 WP_153281040.1 hypothetical protein -
  GFK26_RS05005 (GFK26_05025) - 1115089..1116882 (-) 1794 WP_228121917.1 VanW family protein -
  GFK26_RS05010 (GFK26_05030) - 1116879..1117484 (-) 606 WP_153281042.1 DUF6891 domain-containing protein -
  GFK26_RS05015 (GFK26_05035) - 1117782..1118162 (-) 381 WP_153281043.1 helicase SNF2 -
  GFK26_RS05020 (GFK26_05040) - 1118640..1119116 (+) 477 WP_153281044.1 response regulator -
  GFK26_RS05025 (GFK26_05045) ssb 1119210..1119764 (-) 555 WP_153281045.1 single-stranded DNA-binding protein Machinery gene
  GFK26_RS05030 (GFK26_05050) - 1119922..1121301 (+) 1380 WP_153281046.1 chloride channel protein -
  GFK26_RS05035 (GFK26_05055) uvrA 1121356..1124418 (+) 3063 WP_416222541.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19381.31 Da        Isoelectric Point: 5.9554

>NTDB_id=395788 GFK26_RS05025 WP_153281045.1 1119210..1119764(-) (ssb) [Variovorax paradoxus strain 5C-2]
MASVNKVIVVGNLGRDPEMRTFPSGDQVANVTVATTDRWKDKQSGEMREATEWHRIVFNGRLAEIAGQYLRKGSQVYVEG
SLRTRKWTDKDGIEKYTTEIRADQMQMLGSRQGQGGPSGGPEDDGGYSQGGGGGGYSQGGGGGGGGYAPRAPAAAAPRAP
APAPRQAPAKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=395788 GFK26_RS05025 WP_153281045.1 1119210..1119764(-) (ssb) [Variovorax paradoxus strain 5C-2]
ATGGCATCGGTCAATAAAGTCATCGTCGTCGGCAACCTGGGGCGCGACCCCGAAATGCGGACCTTCCCGAGCGGCGATCA
GGTCGCAAACGTCACCGTGGCCACCACCGATCGCTGGAAAGACAAGCAAAGCGGTGAGATGCGCGAAGCCACCGAATGGC
ACCGCATCGTGTTCAACGGCCGCCTGGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGC
TCGCTGCGCACGCGCAAGTGGACCGACAAGGACGGCATCGAAAAGTACACCACCGAAATCCGCGCCGACCAGATGCAGAT
GCTGGGCAGCCGCCAGGGCCAGGGCGGCCCGTCGGGCGGTCCGGAGGACGACGGCGGCTACTCGCAAGGCGGTGGTGGCG
GCGGTTATTCGCAGGGTGGCGGCGGTGGCGGTGGCGGTTACGCCCCGCGTGCCCCCGCAGCAGCCGCACCGCGCGCGCCG
GCACCGGCACCGCGCCAGGCTCCGGCCAAGTCGTCGTCGGGCTTCGACGACATGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q0LYB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.332

100

0.549
  ssb Vibrio cholerae strain A1552

47.644

100

0.495
  ssb Neisseria gonorrhoeae MS11

46.237

100

0.467
  ssb Neisseria meningitidis MC58

43.684

100

0.451

Multiple sequence alignment