Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BARCL_RS02960 Genome accession   NC_014932
Coordinates   720062..720550 (+) Length   162 a.a.
NCBI ID   WP_013544977.1    Uniprot ID   E6YHJ8
Organism   Bartonella clarridgeiae 73     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 715062..725550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARCL_RS02950 (BARCL_0653) - 716317..716655 (-) 339 WP_026501110.1 P-II family nitrogen regulator -
  BARCL_RS02955 (BARCL_0654) uvrA 716927..719842 (-) 2916 WP_013544976.1 excinuclease ABC subunit UvrA -
  BARCL_RS02960 (BARCL_0655) ssb 720062..720550 (+) 489 WP_013544977.1 single-stranded DNA-binding protein Machinery gene
  BARCL_RS02965 (BARCL_0657) gyrA 720976..723747 (+) 2772 WP_013544979.1 DNA gyrase subunit A -
  BARCL_RS02970 (BARCL_0658) coaD 723781..724275 (+) 495 WP_013544980.1 pantetheine-phosphate adenylyltransferase -
  BARCL_RS02975 (BARCL_0659) - 724290..724874 (+) 585 WP_026501111.1 peptidylprolyl isomerase -
  BARCL_RS02980 (BARCL_0660) - 724899..725411 (+) 513 WP_013544982.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 18686.62 Da        Isoelectric Point: 5.3306

>NTDB_id=39559 BARCL_RS02960 WP_013544977.1 720062..720550(+) (ssb) [Bartonella clarridgeiae 73]
MAGSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDRNTNERKERTEWHNIVIFNENLIKVVEQYLKKGSKIYI
EGQLQTRKWQDQSGNDRYTTEIVLQRYRGELQMLNSREIGSGEQISSVNQSGGGFDQRDNFDQKNNQLEGNFSHQLDDDI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=39559 BARCL_RS02960 WP_013544977.1 720062..720550(+) (ssb) [Bartonella clarridgeiae 73]
ATGGCTGGGAGCCTTAATAAAGTTATTTTAATTGGTAATCTTGGTGCGGACCCTGAAATCCGCCGTTTGAATTCTGGTGA
TCAAGTAGCAAATTTACGTATTGCTACTTCAGAGAGCTGGCGTGATCGCAATACAAATGAACGTAAAGAGCGTACAGAAT
GGCACAATATCGTTATTTTTAATGAAAATCTGATTAAAGTTGTTGAGCAATATTTAAAAAAAGGGAGTAAAATTTATATT
GAGGGTCAGTTGCAGACACGCAAATGGCAAGATCAAAGTGGTAATGATCGTTATACGACAGAGATTGTTTTACAAAGATA
CCGTGGTGAATTACAAATGCTTAATAGCCGTGAAATAGGAAGTGGAGAGCAAATATCTAGTGTAAATCAGTCAGGTGGTG
GTTTCGATCAGAGAGATAATTTTGACCAGAAGAACAATCAATTAGAAGGGAATTTTTCACACCAACTGGATGATGATATT
CCTTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E6YHJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.677

100

0.568
  ssb Vibrio cholerae strain A1552

47.399

100

0.506
  ssb Neisseria gonorrhoeae MS11

42.405

97.531

0.414
  ssb Neisseria meningitidis MC58

41.772

97.531

0.407

Multiple sequence alignment