Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | GCD22_RS01255 | Genome accession | NZ_CP045571 |
| Coordinates | 240114..241472 (+) | Length | 452 a.a. |
| NCBI ID | WP_050816103.1 | Uniprot ID | A0A5P9XN68 |
| Organism | Acidithiobacillus thiooxidans ATCC 19377 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 235114..246472
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GCD22_RS01240 (GCD22_00254) | - | 235899..236783 (+) | 885 | WP_024893403.1 | shikimate dehydrogenase | - |
| GCD22_RS01245 (GCD22_00255) | pilB | 236753..238471 (+) | 1719 | WP_024893402.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GCD22_RS01250 (GCD22_00256) | - | 238504..240117 (+) | 1614 | WP_024893401.1 | ATP-binding protein | - |
| GCD22_RS01255 (GCD22_00257) | pilR | 240114..241472 (+) | 1359 | WP_050816103.1 | sigma-54 dependent transcriptional regulator | Regulator |
| GCD22_RS01260 (GCD22_00258) | - | 241469..242269 (+) | 801 | WP_031569873.1 | A24 family peptidase | - |
| GCD22_RS01265 (GCD22_00259) | coaE | 242276..242884 (+) | 609 | WP_031569871.1 | dephospho-CoA kinase | - |
| GCD22_RS01270 (GCD22_00260) | zapD | 242980..243726 (+) | 747 | WP_024893398.1 | cell division protein ZapD | - |
| GCD22_RS01275 (GCD22_00261) | - | 243761..244765 (+) | 1005 | WP_024893397.1 | class 1 fructose-bisphosphatase | - |
| GCD22_RS01280 (GCD22_00262) | - | 244889..245155 (-) | 267 | WP_024893396.1 | phosphopantetheine-binding protein | - |
| GCD22_RS01285 | bamE | 245693..246193 (+) | 501 | WP_140391095.1 | outer membrane protein assembly factor BamE | - |
Sequence
Protein
Download Length: 452 a.a. Molecular weight: 48955.01 Da Isoelectric Point: 5.9768
>NTDB_id=395253 GCD22_RS01255 WP_050816103.1 240114..241472(+) (pilR) [Acidithiobacillus thiooxidans ATCC 19377]
MMTNCPVPSALVVDDEPNIVELLKITLQGMGLQVSGAGSLAEAHARLSHDLPSLVLSDLRLPDGSGIDLVRYLHNAHPHI
PVAVITAYSSADGAVEAMQAGAFDYMSKPIELARLRQLVAQALKLNHPQGMEQDATNRLIGQSLVMQQLRADIRKLARSN
APVHITGESGTGKELAARAIHDSSLRQDKPFVAVNCGAIPEGLIESELFGAEKGAYSGATQSRQGLFQAANGGTLFLDEI
AELPMLMQVKLLRAIQERVIRPLGGAREISLDLRFISATHRDLGAMVEAGSFRQDLLYRLNVVQLHMPPLRQRLEDVPQL
VEAILQRINGQADQSPTILAEDVLEKLQQYDFPGNVRELENLLERSLVFPDKNILENGNHVAPNRNVDRSFSSVAPKTES
GVACTLDSAEADLLRSVLAEVSGDPVAAATRLGICPQSFALRLTRAVTGRGR
MMTNCPVPSALVVDDEPNIVELLKITLQGMGLQVSGAGSLAEAHARLSHDLPSLVLSDLRLPDGSGIDLVRYLHNAHPHI
PVAVITAYSSADGAVEAMQAGAFDYMSKPIELARLRQLVAQALKLNHPQGMEQDATNRLIGQSLVMQQLRADIRKLARSN
APVHITGESGTGKELAARAIHDSSLRQDKPFVAVNCGAIPEGLIESELFGAEKGAYSGATQSRQGLFQAANGGTLFLDEI
AELPMLMQVKLLRAIQERVIRPLGGAREISLDLRFISATHRDLGAMVEAGSFRQDLLYRLNVVQLHMPPLRQRLEDVPQL
VEAILQRINGQADQSPTILAEDVLEKLQQYDFPGNVRELENLLERSLVFPDKNILENGNHVAPNRNVDRSFSSVAPKTES
GVACTLDSAEADLLRSVLAEVSGDPVAAATRLGICPQSFALRLTRAVTGRGR
Nucleotide
Download Length: 1359 bp
>NTDB_id=395253 GCD22_RS01255 WP_050816103.1 240114..241472(+) (pilR) [Acidithiobacillus thiooxidans ATCC 19377]
ATGATGACGAATTGTCCTGTTCCCTCGGCATTGGTCGTAGATGACGAGCCCAATATTGTTGAATTATTAAAGATTACTTT
GCAGGGTATGGGGCTGCAGGTGTCCGGAGCAGGTTCTCTGGCGGAGGCTCATGCCCGTCTATCTCATGATCTCCCCTCGC
TGGTGCTGAGCGATTTACGTTTGCCAGATGGTTCAGGTATTGATTTGGTGCGATATTTGCACAATGCCCATCCACATATT
CCGGTGGCCGTCATTACGGCTTATTCATCAGCGGATGGTGCTGTAGAGGCCATGCAGGCTGGGGCTTTTGACTATATGTC
CAAGCCCATTGAGTTGGCACGCCTGCGTCAGTTGGTGGCCCAGGCGCTCAAGCTGAATCATCCCCAGGGTATGGAGCAGG
ATGCGACGAACCGGCTGATCGGTCAGTCTCTCGTAATGCAGCAATTAAGAGCAGATATTCGCAAACTGGCCCGTAGTAAT
GCCCCTGTTCATATTACGGGCGAGTCAGGAACCGGCAAGGAGCTGGCTGCACGGGCTATTCATGATTCCAGCCTGCGGCA
GGACAAGCCTTTTGTGGCCGTGAATTGTGGCGCGATTCCCGAAGGTTTGATTGAGAGCGAATTATTTGGTGCCGAAAAAG
GCGCTTATTCTGGCGCAACCCAGTCCCGCCAGGGGCTTTTCCAGGCGGCTAACGGAGGCACGCTTTTTCTGGACGAAATT
GCTGAGTTGCCCATGTTGATGCAGGTCAAGTTGCTGCGTGCCATTCAGGAGCGGGTGATCAGGCCGCTGGGTGGAGCGCG
CGAAATTTCTTTGGATCTGCGGTTTATTTCGGCGACGCATCGCGACCTTGGCGCGATGGTGGAGGCTGGGAGCTTTCGTC
AAGACCTTCTATATCGGCTGAATGTGGTGCAGTTACACATGCCGCCATTACGGCAACGACTGGAAGATGTTCCCCAGCTA
GTCGAGGCGATTCTTCAGCGCATCAATGGGCAAGCAGACCAGAGCCCGACCATTTTGGCGGAAGACGTCCTGGAAAAGCT
GCAGCAATATGATTTTCCGGGTAATGTGCGCGAACTGGAGAATTTGCTGGAGCGTAGTCTGGTATTTCCGGACAAGAATA
TTCTTGAAAATGGAAATCACGTTGCTCCGAACCGGAATGTGGACCGAAGTTTCTCTTCAGTCGCTCCGAAAACCGAATCC
GGGGTTGCCTGCACCCTGGATAGTGCCGAAGCCGATTTGCTCCGATCCGTGCTTGCAGAGGTCTCTGGAGACCCTGTGGC
AGCGGCGACACGACTGGGTATTTGTCCACAATCTTTTGCACTCAGATTGACCCGTGCCGTGACTGGGAGGGGGAGGTGA
ATGATGACGAATTGTCCTGTTCCCTCGGCATTGGTCGTAGATGACGAGCCCAATATTGTTGAATTATTAAAGATTACTTT
GCAGGGTATGGGGCTGCAGGTGTCCGGAGCAGGTTCTCTGGCGGAGGCTCATGCCCGTCTATCTCATGATCTCCCCTCGC
TGGTGCTGAGCGATTTACGTTTGCCAGATGGTTCAGGTATTGATTTGGTGCGATATTTGCACAATGCCCATCCACATATT
CCGGTGGCCGTCATTACGGCTTATTCATCAGCGGATGGTGCTGTAGAGGCCATGCAGGCTGGGGCTTTTGACTATATGTC
CAAGCCCATTGAGTTGGCACGCCTGCGTCAGTTGGTGGCCCAGGCGCTCAAGCTGAATCATCCCCAGGGTATGGAGCAGG
ATGCGACGAACCGGCTGATCGGTCAGTCTCTCGTAATGCAGCAATTAAGAGCAGATATTCGCAAACTGGCCCGTAGTAAT
GCCCCTGTTCATATTACGGGCGAGTCAGGAACCGGCAAGGAGCTGGCTGCACGGGCTATTCATGATTCCAGCCTGCGGCA
GGACAAGCCTTTTGTGGCCGTGAATTGTGGCGCGATTCCCGAAGGTTTGATTGAGAGCGAATTATTTGGTGCCGAAAAAG
GCGCTTATTCTGGCGCAACCCAGTCCCGCCAGGGGCTTTTCCAGGCGGCTAACGGAGGCACGCTTTTTCTGGACGAAATT
GCTGAGTTGCCCATGTTGATGCAGGTCAAGTTGCTGCGTGCCATTCAGGAGCGGGTGATCAGGCCGCTGGGTGGAGCGCG
CGAAATTTCTTTGGATCTGCGGTTTATTTCGGCGACGCATCGCGACCTTGGCGCGATGGTGGAGGCTGGGAGCTTTCGTC
AAGACCTTCTATATCGGCTGAATGTGGTGCAGTTACACATGCCGCCATTACGGCAACGACTGGAAGATGTTCCCCAGCTA
GTCGAGGCGATTCTTCAGCGCATCAATGGGCAAGCAGACCAGAGCCCGACCATTTTGGCGGAAGACGTCCTGGAAAAGCT
GCAGCAATATGATTTTCCGGGTAATGTGCGCGAACTGGAGAATTTGCTGGAGCGTAGTCTGGTATTTCCGGACAAGAATA
TTCTTGAAAATGGAAATCACGTTGCTCCGAACCGGAATGTGGACCGAAGTTTCTCTTCAGTCGCTCCGAAAACCGAATCC
GGGGTTGCCTGCACCCTGGATAGTGCCGAAGCCGATTTGCTCCGATCCGTGCTTGCAGAGGTCTCTGGAGACCCTGTGGC
AGCGGCGACACGACTGGGTATTTGTCCACAATCTTTTGCACTCAGATTGACCCGTGCCGTGACTGGGAGGGGGAGGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
50.448 |
98.673 |
0.498 |
| pilR | Acinetobacter baumannii strain A118 |
44.13 |
100 |
0.449 |