Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GFB64_RS05630 Genome accession   NZ_CP045567
Coordinates   1162131..1162571 (+) Length   146 a.a.
NCBI ID   WP_194854033.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain TK-P4A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1157131..1167571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB64_RS05580 (GFB64_06010) - 1157724..1158170 (-) 447 WP_186338336.1 ImmA/IrrE family metallo-endopeptidase -
  GFB64_RS05585 (GFB64_06015) - 1158189..1158647 (-) 459 WP_003582691.1 helix-turn-helix domain-containing protein -
  GFB64_RS05590 (GFB64_06020) - 1158811..1159074 (+) 264 WP_016385974.1 helix-turn-helix domain-containing protein -
  GFB64_RS05595 (GFB64_06025) - 1159236..1159634 (-) 399 WP_194854027.1 hypothetical protein -
  GFB64_RS05600 - 1159722..1159868 (+) 147 WP_194854028.1 hypothetical protein -
  GFB64_RS05605 (GFB64_06030) - 1159934..1160482 (+) 549 WP_194854029.1 hypothetical protein -
  GFB64_RS05610 (GFB64_06035) - 1160461..1160682 (+) 222 WP_003582309.1 helix-turn-helix domain-containing protein -
  GFB64_RS15095 (GFB64_06040) - 1160695..1160823 (+) 129 WP_003581996.1 hypothetical protein -
  GFB64_RS05615 (GFB64_06045) - 1160811..1161062 (+) 252 WP_194854030.1 hypothetical protein -
  GFB64_RS05620 (GFB64_06050) - 1161055..1161462 (+) 408 WP_194854031.1 hypothetical protein -
  GFB64_RS05625 (GFB64_06055) - 1161475..1162134 (+) 660 WP_194854032.1 ERF family protein -
  GFB64_RS05630 (GFB64_06060) ssb 1162131..1162571 (+) 441 WP_194854033.1 single-stranded DNA-binding protein Machinery gene
  GFB64_RS14980 - 1162643..1163428 (+) 786 WP_228550492.1 helix-turn-helix domain-containing protein -
  GFB64_RS05645 (GFB64_06075) - 1163415..1164197 (+) 783 WP_194854034.1 ATP-binding protein -
  GFB64_RS05650 (GFB64_06080) - 1164194..1164523 (+) 330 WP_194854035.1 hypothetical protein -
  GFB64_RS05655 (GFB64_06085) - 1164524..1164778 (+) 255 WP_194854036.1 hypothetical protein -
  GFB64_RS05660 (GFB64_06090) - 1164775..1165140 (+) 366 WP_003607027.1 endodeoxyribonuclease -
  GFB64_RS05665 (GFB64_06095) - 1165154..1165258 (+) 105 WP_194854037.1 acetyltransferase -
  GFB64_RS05670 (GFB64_06100) - 1165261..1165809 (+) 549 WP_194854038.1 DUF1642 domain-containing protein -
  GFB64_RS05675 (GFB64_06105) - 1165799..1166230 (+) 432 WP_194854039.1 hypothetical protein -
  GFB64_RS05680 (GFB64_06110) - 1166227..1166601 (+) 375 WP_228550493.1 DUF1642 domain-containing protein -
  GFB64_RS05685 (GFB64_06115) - 1166598..1166837 (+) 240 WP_194854040.1 hypothetical protein -
  GFB64_RS05690 (GFB64_06120) - 1166834..1167082 (+) 249 WP_228550494.1 hypothetical protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16099.82 Da        Isoelectric Point: 8.0184

>NTDB_id=395231 GFB64_RS05630 WP_194854033.1 1162131..1162571(+) (ssb) [Lacticaseibacillus paracasei strain TK-P4A]
MINSVALNGRLTRDVDLRYTTSGIAVGQFTLAVDRRFKSKSGNRETDFIGCHIWRKSAENLANYAHKGSLIGIEGRIQTR
TYDNNQGQKVYVTEVIADNFSLLEPKPVQRTDNVGPSNNQTAQSTASQPSGNNGKPIDVNDDDLPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=395231 GFB64_RS05630 WP_194854033.1 1162131..1162571(+) (ssb) [Lacticaseibacillus paracasei strain TK-P4A]
GTGATCAATTCAGTTGCTCTTAATGGAAGATTAACAAGAGACGTCGATTTGCGTTACACCACGAGCGGAATTGCCGTTGG
ACAATTCACCTTGGCTGTTGACAGGCGTTTTAAAAGCAAAAGCGGTAATCGCGAGACAGACTTCATTGGTTGCCATATTT
GGAGAAAATCAGCAGAAAACCTAGCGAATTACGCTCACAAAGGTTCATTGATTGGTATTGAAGGACGTATTCAAACCCGC
ACTTATGACAATAACCAAGGACAAAAGGTTTATGTGACAGAAGTGATTGCCGATAACTTTAGCCTGCTAGAGCCAAAACC
AGTACAGCGGACAGATAATGTAGGGCCGTCAAACAATCAGACCGCGCAGAGTACAGCAAGTCAGCCTAGCGGGAACAACG
GCAAACCGATTGATGTTAATGATGACGATCTTCCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

54.118

100

0.63
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.256

100

0.568
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.364

75.342

0.425
  ssb Vibrio cholerae strain A1552

30.857

100

0.37

Multiple sequence alignment