Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   GD578_RS00795 Genome accession   NZ_CP045560
Coordinates   168657..169787 (-) Length   376 a.a.
NCBI ID   WP_033855697.1    Uniprot ID   A0AB37CQ25
Organism   Acinetobacter nosocomialis strain AC1530     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 163657..174787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GD578_RS00770 (GD578_00775) - 163829..164593 (-) 765 WP_002054186.1 AraC family transcriptional regulator -
  GD578_RS00775 (GD578_00780) - 164615..165829 (-) 1215 WP_153518178.1 MFS transporter -
  GD578_RS00780 (GD578_00785) - 165965..166618 (+) 654 WP_081401033.1 TetR/AcrR family transcriptional regulator -
  GD578_RS00785 (GD578_00790) - 166724..167644 (+) 921 WP_002054284.1 DMT family transporter -
  GD578_RS00790 (GD578_00795) - 168037..168606 (-) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  GD578_RS00795 (GD578_00800) dprA 168657..169787 (-) 1131 WP_033855697.1 DNA-processing protein DprA Machinery gene
  GD578_RS00800 (GD578_00805) tsaP 169808..170962 (-) 1155 WP_153518180.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  GD578_RS00805 (GD578_00810) def 171085..171615 (+) 531 WP_002054252.1 peptide deformylase -
  GD578_RS00810 (GD578_00815) - 171652..172080 (+) 429 WP_002054220.1 DUF2946 family protein -
  GD578_RS00815 (GD578_00820) - 172152..174251 (+) 2100 WP_002054210.1 TonB-dependent copper receptor -
  GD578_RS00820 (GD578_00825) - 174295..174501 (+) 207 WP_002054207.1 DUF4199 domain-containing protein -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41806.20 Da        Isoelectric Point: 6.5380

>NTDB_id=395119 GD578_RS00795 WP_033855697.1 168657..169787(-) (dprA) [Acinetobacter nosocomialis strain AC1530]
MLTQLSSHHYHTLKVWYLVQHSSVSFKKIIDYFGTCEKATQPDGLVKWSSLGLHANHLKRVNEFQTAQGQAQFEQLIQQV
QQHTDFILTPDDSGYPTQLLPYTDHPPVIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLGEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQHSQNEETNTNTPEIP
EHLIDLYQSLDWVGQNIDQLVIHHNVSVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=395119 GD578_RS00795 WP_033855697.1 168657..169787(-) (dprA) [Acinetobacter nosocomialis strain AC1530]
ATGCTCACCCAACTTTCTTCACACCATTACCACACGCTTAAAGTGTGGTATTTGGTGCAGCACTCATCAGTTAGTTTTAA
AAAAATTATCGATTATTTTGGAACTTGTGAAAAAGCAACTCAACCTGATGGTTTAGTAAAGTGGTCCTCTCTGGGGCTAC
ATGCTAATCACTTAAAGCGTGTAAACGAATTTCAAACGGCACAAGGCCAAGCTCAGTTCGAACAGCTTATACAACAAGTT
CAGCAGCATACTGATTTTATTTTGACGCCCGATGACTCTGGCTACCCTACTCAATTACTCCCTTATACAGATCATCCGCC
TGTTATTTTTGGAAAAGGTCAGGCACAGGCATTATTACAACCGCAAATTGCGATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGTCAGGTGGCTTATGATTTTGCCTACTATTTAAGTGAAAAGGGCTTTTTTATTAGTAGTGGCCTGGCTTATGGC
ATTGATGAAGCAGCTCATCAAGGTGCATCCGCTCATCAACGTACAATTGCAGTCACGGGTACGGGCCTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTGGGAGAACATATTTTGGCTCAGAACGGCGCCATTATTACTGAGTTTTTACCAGGTACAC
CACCATTACAACAGCATTTCCCACGTAGAAACCGAATTGTCAGTGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGCAAAACCGTATTCGCTATTCCGGGTCATATTTA
TAGTGAGTTCCATCAAGGATGCCATCAACTTATTCGTGAGGGAGCAATTTTAGTTGATCATCCCGAACAAATTATTGAAG
ACCTCGCCTTACCAACTCAATGGCAAAGCCAGCAACACAGTCAAAATGAAGAAACTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCATCACAATGTTTC
GGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

95.213

100

0.952

  dprA Acinetobacter baumannii D1279779

95.213

100

0.952

  dprA Acinetobacter baylyi ADP1

70.866

100

0.718

  dprA Vibrio cholerae strain A1552

42.9

88.032

0.378


Multiple sequence alignment