Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GD587_RS16540 | Genome accession | NZ_CP045538 |
| Coordinates | 3555332..3555856 (+) | Length | 174 a.a. |
| NCBI ID | WP_004249162.1 | Uniprot ID | A0A1Z1SRL1 |
| Organism | Proteus mirabilis strain CRE14IB | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3550332..3560856
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GD587_RS16535 (GD587_05900) | uvrA | 3552245..3555079 (-) | 2835 | WP_112843451.1 | excinuclease ABC subunit UvrA | - |
| GD587_RS16540 (GD587_05905) | ssb | 3555332..3555856 (+) | 525 | WP_004249162.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| GD587_RS19700 | - | 3556012..3556146 (+) | 135 | WP_258523355.1 | hypothetical protein | - |
| GD587_RS19620 | - | 3556165..3556455 (+) | 291 | WP_234410680.1 | hypothetical protein | - |
| GD587_RS16550 (GD587_05915) | - | 3556695..3557819 (+) | 1125 | WP_020946337.1 | type IV toxin-antitoxin system AbiEi family antitoxin | - |
| GD587_RS19625 (GD587_05920) | - | 3557804..3558709 (+) | 906 | WP_112843452.1 | hypothetical protein | - |
| GD587_RS16560 (GD587_05925) | zur | 3559277..3559807 (+) | 531 | WP_049197707.1 | zinc uptake transcriptional repressor Zur | - |
| GD587_RS16565 (GD587_05930) | lexA | 3560000..3560611 (-) | 612 | WP_004245906.1 | transcriptional repressor LexA | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18830.90 Da Isoelectric Point: 4.9468
>NTDB_id=394942 GD587_RS16540 WP_004249162.1 3555332..3555856(+) (ssb) [Proteus mirabilis strain CRE14IB]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQASQQFSGGAPSRPAQQPAAAPAP
SNEPPMDFDDDIPF
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQASQQFSGGAPSRPAQQPAAAPAP
SNEPPMDFDDDIPF
Nucleotide
Download Length: 525 bp
>NTDB_id=394942 GD587_RS16540 WP_004249162.1 3555332..3555856(+) (ssb) [Proteus mirabilis strain CRE14IB]
ATGGCGAGCAGAGGCGTTAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTGGCAAATCTGACACTAGCAACTTCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAGAAAACCG
AATGGCACCGTGTGGTCATTTTCGGCAAACTAGCAGAAATTGCTGGCGAGTATCTGCGTAAAGGTTCACAAGTTTATATT
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTACAGCACTGAAGTTGTGGTGAATATCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCGCCTTCACAAGGCCAAGGCGGTTGGGGTCAACCTC
AGCAACCACAAGCATCACAACAGTTTAGTGGTGGTGCACCATCTCGCCCAGCACAACAACCCGCAGCGGCACCAGCGCCA
AGTAATGAACCACCAATGGACTTTGATGACGATATTCCGTTCTAG
ATGGCGAGCAGAGGCGTTAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTGGCAAATCTGACACTAGCAACTTCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAGAAAACCG
AATGGCACCGTGTGGTCATTTTCGGCAAACTAGCAGAAATTGCTGGCGAGTATCTGCGTAAAGGTTCACAAGTTTATATT
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTACAGCACTGAAGTTGTGGTGAATATCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCGCCTTCACAAGGCCAAGGCGGTTGGGGTCAACCTC
AGCAACCACAAGCATCACAACAGTTTAGTGGTGGTGCACCATCTCGCCCAGCACAACAACCCGCAGCGGCACCAGCGCCA
AGTAATGAACCACCAATGGACTTTGATGACGATATTCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
71.892 |
100 |
0.764 |
| ssb | Glaesserella parasuis strain SC1401 |
57.065 |
100 |
0.603 |
| ssb | Neisseria meningitidis MC58 |
48.023 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.023 |
100 |
0.489 |