Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DLI71_RS13110 Genome accession   NZ_CP045528
Coordinates   2699438..2700019 (-) Length   193 a.a.
NCBI ID   WP_001215080.1    Uniprot ID   A0A009T283
Organism   Acinetobacter baumannii strain 6507     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2694438..2705019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLI71_RS13085 (DLI71_13085) - 2694456..2695955 (+) 1500 WP_001257166.1 PLP-dependent aminotransferase family protein -
  DLI71_RS13090 (DLI71_13090) - 2696016..2697458 (-) 1443 WP_000718865.1 amino acid permease -
  DLI71_RS13095 (DLI71_13095) - 2697764..2698312 (-) 549 WP_032046292.1 helix-turn-helix domain-containing protein -
  DLI71_RS13100 (DLI71_13100) - 2698381..2699076 (+) 696 WP_150424155.1 AzlC family ABC transporter permease -
  DLI71_RS13105 (DLI71_13105) - 2699073..2699396 (+) 324 WP_150424154.1 AzlD domain-containing protein -
  DLI71_RS13110 (DLI71_13110) ssb 2699438..2700019 (-) 582 WP_001215080.1 single-stranded DNA-binding protein Machinery gene
  DLI71_RS13115 (DLI71_13115) - 2700071..2701435 (-) 1365 WP_150424153.1 MFS transporter -
  DLI71_RS13120 (DLI71_13120) - 2701582..2702664 (-) 1083 WP_150424152.1 DUF475 domain-containing protein -
  DLI71_RS13125 (DLI71_13125) tenA 2702927..2703601 (+) 675 WP_150424151.1 thiaminase II -
  DLI71_RS13130 (DLI71_13130) - 2703651..2703992 (-) 342 WP_000263326.1 GlpM family protein -
  DLI71_RS13135 (DLI71_13135) - 2704045..2704398 (-) 354 WP_005109291.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20978.80 Da        Isoelectric Point: 6.4822

>NTDB_id=394892 DLI71_RS13110 WP_001215080.1 2699438..2700019(-) (ssb) [Acinetobacter baumannii strain 6507]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGGQGGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=394892 DLI71_RS13110 WP_001215080.1 2699438..2700019(-) (ssb) [Acinetobacter baumannii strain 6507]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGCCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAGCCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAATCAAGGTGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGGTGGTTTC
GGTAATGGTGGCAATAGCCCGCAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009T283

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394

Multiple sequence alignment