Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   PSESU_RS03465 Genome accession   NC_014924
Coordinates   786863..787921 (+) Length   352 a.a.
NCBI ID   WP_013534382.1    Uniprot ID   E6WR94
Organism   Pseudoxanthomonas suwonensis 11-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 781863..792921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSESU_RS03450 (Psesu_0696) - 782115..783404 (+) 1290 WP_013534379.1 citrate synthase -
  PSESU_RS03455 (Psesu_0697) - 783506..784126 (-) 621 WP_013534380.1 hypothetical protein -
  PSESU_RS03460 (Psesu_0698) - 784203..786647 (-) 2445 WP_013534381.1 penicillin-binding protein 1A -
  PSESU_RS03465 (Psesu_0699) pilM 786863..787921 (+) 1059 WP_013534382.1 pilus assembly protein PilM Machinery gene
  PSESU_RS03470 (Psesu_0700) - 787921..788709 (+) 789 WP_013534383.1 PilN domain-containing protein -
  PSESU_RS03475 (Psesu_0701) pilO 788706..789383 (+) 678 WP_013534384.1 type 4a pilus biogenesis protein PilO -
  PSESU_RS03480 (Psesu_0702) - 789383..789928 (+) 546 WP_013534385.1 pilus assembly protein PilP -
  PSESU_RS03485 (Psesu_0703) - 789944..791803 (+) 1860 WP_013534386.1 type IV pilus secretin PilQ family protein -
  PSESU_RS03490 (Psesu_0704) - 791907..792920 (+) 1014 WP_013534387.1 MoxR family ATPase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37767.14 Da        Isoelectric Point: 4.4028

>NTDB_id=39485 PSESU_RS03465 WP_013534382.1 786863..787921(+) (pilM) [Pseudoxanthomonas suwonensis 11-1]
MGLIPKSQSPLIGVDISSTAVKLLQLSRSGNRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVTRSGTKAKAAAAA
VAGAAVITKVIPMPADLDEDDLEAQVEFEAVNHIPYPIEEVNLDFEVLGPMPNNPDTVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALIADDLPGGRNGVVALIDIGATMTTLNVLRGGRSLYSREQLFGGKQLTDEVMRRYGLTYEE
AGQAKRQGGLPETYEFEVLEPFKEAAVQQVSRLLQFFYAGSEFNRVDQIVLAGGCASIFGLPEMVEEQLGVPTQVANPLA
QMTLGPRVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=39485 PSESU_RS03465 WP_013534382.1 786863..787921(+) (pilM) [Pseudoxanthomonas suwonensis 11-1]
GTGGGGCTCATCCCGAAAAGTCAGTCGCCGCTGATCGGCGTCGACATCAGCTCGACTGCGGTCAAGCTGCTGCAGCTGTC
ACGCAGCGGCAACCGTTACCGCGTCGAACACTATGCTGTTGAACCGCTCCCGCCGAACGCGGTGGTGGAGAAGAACATCG
TCGAGGTCGAGGCGGTGGGCGAGGCCATCCGCCGCGCCGTCACCCGTTCCGGCACCAAGGCCAAGGCGGCCGCGGCGGCC
GTGGCCGGCGCCGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGACCTGGACGAGGACGACCTGGAAGCCCAGGTCGA
GTTCGAGGCGGTCAACCACATCCCGTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGCTCGGCCCGATGCCGAACA
ACCCCGACACCGTCCAGGTCCTGCTCGCGGCCTCGCGCTCGGAGAACGTCGAGCTGCGCCAGTCGGCGCTGGAGCTGGGC
GGCCTGACCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCCCTGATCGCCGACGACCTGCCCGG
CGGGCGCAACGGCGTGGTGGCGCTGATCGACATCGGCGCGACCATGACCACGCTCAACGTCCTGCGCGGTGGCCGCAGCC
TGTACAGCCGCGAACAACTGTTCGGCGGCAAGCAGCTGACCGACGAGGTGATGCGCCGTTACGGCCTGACCTACGAGGAA
GCCGGCCAGGCCAAGCGCCAGGGCGGCCTGCCCGAGACCTACGAGTTCGAGGTGCTGGAGCCGTTCAAGGAAGCCGCGGT
GCAGCAGGTCAGCCGCCTGCTGCAGTTCTTCTACGCGGGCAGCGAGTTCAACCGGGTCGACCAGATCGTGCTCGCCGGCG
GTTGCGCCTCCATCTTCGGCCTGCCGGAGATGGTCGAGGAGCAGCTGGGCGTTCCGACCCAGGTCGCCAACCCGCTGGCG
CAGATGACCCTCGGCCCGCGCGTGCAGGCGCACGCGCTGGCGCAGGACGCCCCGGCCCTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E6WR94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50.568

100

0.506
  pilM Legionella pneumophila strain ERS1305867

45.869

99.716

0.457

Multiple sequence alignment