Detailed information NTG0394583

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GCK65_RS02425
• Genome accession: NZ_CP045501
• Coordinates: 529505..530377 (-)
• Length: 290 a.a.
• NCBI ID: WP_242797299.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain Aer_Pi25.1HTAS
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 524505..535377

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GCK65_RS02400 (GCK65_02440)	-	526241..527425 (+)	1185	WP_242797294.1	tetratricopeptide repeat protein	-
GCK65_RS02405 (GCK65_02445)	mutT	527434..527847 (+)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
GCK65_RS02410 (GCK65_02450)	yacG	527908..528102 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
GCK65_RS02415 (GCK65_02455)	zapD	528112..528834 (-)	723	WP_242797296.1	cell division protein ZapD	-
GCK65_RS02420 (GCK65_02460)	coaE	528872..529486 (-)	615	WP_242797298.1	dephospho-CoA kinase	-
GCK65_RS02425 (GCK65_02465)	pilD	529505..530377 (-)	873	WP_242797299.1	A24 family peptidase	Machinery gene
GCK65_RS02430 (GCK65_02470)	pilC	530400..531641 (-)	1242	WP_011707570.1	type II secretion system F family protein	Machinery gene
GCK65_RS02435 (GCK65_02475)	pilB	531757..533463 (-)	1707	WP_029302067.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
GCK65_RS02440 (GCK65_02480)	tapA	533470..533886 (-)	417	WP_042066959.1	type IVa pilus major pilin TapA	-
GCK65_RS02445 (GCK65_02490)	nadC	534209..535066 (-)	858	WP_242797301.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32544.84 Da
• Isoelectric Point: 6.7364

>NTDB_id=394583 GCK65_RS02425 WP_242797299.1 529505..530377(-) (pilD) [Aeromonas hydrophila strain Aer_Pi25.1HTAS]
MLIITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVAAATYPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLTGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTCKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=394583 GCK65_RS02425 WP_242797299.1 529505..530377(-) (pilD) [Aeromonas hydrophila strain Aer_Pi25.1HTAS]
ATGTTGATTATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTTCTCTTTTCCCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCGGAAACACAGCCTCAGCAGGAAGAGCGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCTCATTGCGGCCACGCC
ATCACGGCCATGGAAAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC
GGCCCGTTACCCCTTGGTGGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGCCGCCGCAACATACCCACCGGGCTGGGGCT
TGCTGGCTGCCTTGCTGCTCACCTGGGTGCTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTGCTGCCTGACCAG
CTGACCCTGCCACTGCTGTGGGGTGGCCTGCTGTTCAATCTTACAGGGGGATTTGCGCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTACTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCTGCAAGGAAGGGATGGGCTATG
GCGACTTCAAACTGCTGGCGGCGCTGGGTGCCTGGCTCGGCTGGCAGGCGCTGCCCATCGTGCTGCTGCTCTCGTCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATCCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGTCCCTACCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.976	98.966	0.603
pilD	Vibrio campbellii strain DS40M4	55.052	98.966	0.545
pilD	Acinetobacter baumannii D1279779	53.521	97.931	0.524
pilD	Acinetobacter nosocomialis M2	53.521	97.931	0.524
pilD	Neisseria gonorrhoeae MS11	48.352	94.138	0.455