Detailed information NTG0394572

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: GE021_RS00310
• Genome accession: NZ_CP053792
• Coordinates: 54263..55261 (+)
• Length: 332 a.a.
• NCBI ID: WP_125074312.1
• Uniprot ID: A0A3P5Y7D5
• Organism: Streptococcus canis strain HL_77_1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 49263..60261

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GE021_RS00290 (GE021_000290)	purE	49634..50125 (+)	492	WP_125074315.1	5-(carboxyamino)imidazole ribonucleotide mutase	-
GE021_RS00295 (GE021_000295)	purK	50112..51182 (+)	1071	WP_125074314.1	5-(carboxyamino)imidazole ribonucleotide synthase	-
GE021_RS00300 (GE021_000300)	purB	51700..52992 (+)	1293	WP_003046005.1	adenylosuccinate lyase	-
GE021_RS00305 (GE021_000305)	comR	53131..54042 (+)	912	WP_125074313.1	helix-turn-helix domain-containing protein	Regulator
GE021_RS11105	comS	54129..54230 (+)	102	WP_217267493.1	quorum-sensing system DWW-type pheromone	Regulator
GE021_RS00310 (GE021_000310)	ruvB	54263..55261 (+)	999	WP_125074312.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
GE021_RS00315 (GE021_000315)	-	55403..55846 (+)	444	WP_125074311.1	low molecular weight protein-tyrosine-phosphatase	-
GE021_RS00320 (GE021_000320)	-	55863..56264 (+)	402	WP_125074310.1	MORN repeat-containing protein	-
GE021_RS00325 (GE021_000325)	-	56261..58036 (+)	1776	WP_164406344.1	acyltransferase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37404.82 Da
• Isoelectric Point: 4.5582

>NTDB_id=394572 GE021_RS00310 WP_125074312.1 54263..55261(+) (ruvB) [Streptococcus canis strain HL_77_1]
MARILDNDIMGDEELVERTLRPQYLREYIGQDKVKEQLTIFIEAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQEADLTEIVERTADIFEIEIIHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVIT
TQITDKALTMLDVDREGLDYVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFLMRTRTGRVVTEK
AYHHLGYPYQNH

Nucleotide

• Length: 999 bp

>NTDB_id=394572 GE021_RS00310 WP_125074312.1 54263..55261(+) (ruvB) [Streptococcus canis strain HL_77_1]
ATGGCTAGAATTTTAGATAATGATATAATGGGGGACGAGGAGCTTGTTGAGCGAACTCTTCGTCCACAGTACTTGCGTGA
GTACATCGGGCAAGATAAAGTTAAAGAACAGTTAACCATTTTTATTGAAGCAGCTAAGCTGCGTGATGAGTCTTTAGATC
ATGTCTTGCTGTTTGGTCCTCCAGGGTTAGGGAAAACGACTATGGCATTTGTGATTGCTAATGAATTAGGGGTTAATTTG
AAGCAAACCTCAGGCCCAGCGATTGAAAAGGCTGGGGACTTGGTGGCCATTTTAAATGATTTGGAACCGGGGGATGTCTT
ATTTATTGATGAAATTCATCGCCTTCCAATGGCTGTTGAGGAAGTGCTGTATAGCGCTATGGAAGATTTTTATATTGACA
TTATGATTGGTGCTGGAGATACCAGTCGAAGTGTTCATTTGGATTTACCGCCCTTTACGTTGATTGGCGCGACAACACGA
GCTGGGATGTTATCAAATCCTTTGCGAGCTCGTTTTGGAATTACTGGACACATGGAGTACTATCAGGAAGCTGATTTGAC
TGAAATTGTGGAACGGACAGCAGATATTTTTGAAATAGAAATTATCCACGAGGCGGCCCAAGAGCTAGCTTGTCGCAGTC
GAGGAACCCCACGTATTGCCAATCGATTATTAAAACGAGTGCGTGATTATGCTCAAATTGTTGGAGATGGAGTGATTACG
ACGCAAATCACAGATAAGGCTTTAACCATGTTGGATGTTGACCGAGAAGGGCTTGATTATGTGGACCAAAAGATTTTACG
AACCATGATTGAAATGTATCAGGGCGGTCCGGTTGGTTTAGGCACTTTATCAGTTAATATTGCAGAAGAACGTGATACGG
TTGAAGACATGTATGAACCCTATTTAATTCAAAAAGGGTTTCTAATGCGTACGCGCACTGGTCGTGTAGTAACTGAAAAA
GCCTATCATCATCTTGGCTACCCTTACCAAAACCATTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

3D structure

• AlphaFold DB: A0A3P5Y7D5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	89.697	99.398	0.892
ruvB	Streptococcus pneumoniae R6	89.697	99.398	0.892
ruvB	Streptococcus pneumoniae D39	89.697	99.398	0.892
ruvB	Bacillus subtilis subsp. subtilis str. 168	61.61	97.289	0.599
ruvB	Helicobacter pylori 26695	50.152	99.096	0.497
ruvB	Synechocystis sp. PCC 6803	50.16	94.277	0.473