Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | FPL20_RS12165 | Genome accession | NZ_CP045478 |
| Coordinates | 2301753..2302088 (-) | Length | 111 a.a. |
| NCBI ID | WP_003226345.1 | Uniprot ID | A0AAE2VGU9 |
| Organism | Bacillus subtilis strain JD-014 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2296753..2307088
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FPL20_RS12115 (FPL20_GE02280) | comGC | 2296772..2297068 (+) | 297 | WP_003230162.1 | comG operon protein ComGC | Machinery gene |
| FPL20_RS12120 (FPL20_GE02281) | comGD | 2297058..2297489 (+) | 432 | WP_004398628.1 | comG operon protein ComGD | Machinery gene |
| FPL20_RS12125 (FPL20_GE02282) | comGE | 2297473..2297820 (+) | 348 | WP_003230165.1 | ComG operon protein 5 | Machinery gene |
| FPL20_RS12130 (FPL20_GE02283) | comGF | 2297846..2298229 (+) | 384 | WP_003230168.1 | ComG operon protein ComGF | Machinery gene |
| FPL20_RS12135 (FPL20_GE02284) | comGG | 2298230..2298604 (+) | 375 | WP_003230170.1 | ComG operon protein ComGG | Machinery gene |
| FPL20_RS12140 (FPL20_GE02285) | spoIITA | 2298675..2298854 (+) | 180 | WP_003230176.1 | YqzE family protein | - |
| FPL20_RS12145 (FPL20_GE02286) | yqzG | 2298896..2299222 (-) | 327 | WP_003246051.1 | YqzG/YhdC family protein | - |
| FPL20_RS12150 (FPL20_GE02287) | tapA | 2299494..2300255 (+) | 762 | WP_004399106.1 | amyloid fiber anchoring/assembly protein TapA | - |
| FPL20_RS12155 (FPL20_GE02288) | sipW | 2300239..2300811 (+) | 573 | WP_003246088.1 | signal peptidase I SipW | - |
| FPL20_RS12160 (FPL20_GE02289) | tasA | 2300875..2301660 (+) | 786 | WP_004398632.1 | biofilm matrix protein TasA | - |
| FPL20_RS12165 (FPL20_GE02290) | sinR | 2301753..2302088 (-) | 336 | WP_003226345.1 | transcriptional regulator SinR | Regulator |
| FPL20_RS12170 (FPL20_GE02291) | sinI | 2302122..2302295 (-) | 174 | WP_003230187.1 | anti-repressor SinI | Regulator |
| FPL20_RS12175 (FPL20_GE02292) | yqhG | 2302478..2303272 (-) | 795 | WP_003230200.1 | YqhG family protein | - |
| FPL20_RS12180 (FPL20_GE02293) | hepAA | 2303293..2304966 (-) | 1674 | WP_004398544.1 | DEAD/DEAH box helicase | - |
| FPL20_RS12185 (FPL20_GE02294) | gcvT | 2305408..2306496 (+) | 1089 | WP_004398598.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12988.64 Da Isoelectric Point: 7.2023
>NTDB_id=394502 FPL20_RS12165 WP_003226345.1 2301753..2302088(-) (sinR) [Bacillus subtilis strain JD-014]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=394502 FPL20_RS12165 WP_003226345.1 2301753..2302088(-) (sinR) [Bacillus subtilis strain JD-014]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |