Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   FPL20_RS12115 Genome accession   NZ_CP045478
Coordinates   2296772..2297068 (+) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis strain JD-014     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2291772..2302068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL20_RS12095 (FPL20_GE02275) yqhB 2291828..2293156 (-) 1329 WP_009967730.1 hemolysin family protein -
  FPL20_RS12100 (FPL20_GE02276) corA 2293299..2294252 (+) 954 WP_004399136.1 magnesium transporter CorA -
  FPL20_RS12105 (FPL20_GE02278) comGA 2294664..2295734 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  FPL20_RS12110 (FPL20_GE02279) comGB 2295721..2296758 (+) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  FPL20_RS12115 (FPL20_GE02280) comGC 2296772..2297068 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  FPL20_RS12120 (FPL20_GE02281) comGD 2297058..2297489 (+) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  FPL20_RS12125 (FPL20_GE02282) comGE 2297473..2297820 (+) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  FPL20_RS12130 (FPL20_GE02283) comGF 2297846..2298229 (+) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  FPL20_RS12135 (FPL20_GE02284) comGG 2298230..2298604 (+) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  FPL20_RS12140 (FPL20_GE02285) spoIITA 2298675..2298854 (+) 180 WP_003230176.1 YqzE family protein -
  FPL20_RS12145 (FPL20_GE02286) yqzG 2298896..2299222 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  FPL20_RS12150 (FPL20_GE02287) tapA 2299494..2300255 (+) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  FPL20_RS12155 (FPL20_GE02288) sipW 2300239..2300811 (+) 573 WP_003246088.1 signal peptidase I SipW -
  FPL20_RS12160 (FPL20_GE02289) tasA 2300875..2301660 (+) 786 WP_004398632.1 biofilm matrix protein TasA -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=394497 FPL20_RS12115 WP_003230162.1 2296772..2297068(+) (comGC) [Bacillus subtilis strain JD-014]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=394497 FPL20_RS12115 WP_003230162.1 2296772..2297068(+) (comGC) [Bacillus subtilis strain JD-014]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment