Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   GE022_RS00860 Genome accession   NZ_CP053790
Coordinates   143326..143754 (+) Length   142 a.a.
NCBI ID   WP_276509017.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 138326..148754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS00840 (GE022_000840) - 140662..141027 (+) 366 WP_125073632.1 DUF1033 family protein -
  GE022_RS00845 (GE022_000845) comGA 141114..142055 (+) 942 WP_003046182.1 competence type IV pilus ATPase ComGA Machinery gene
  GE022_RS00850 (GE022_000850) comGB 141988..143022 (+) 1035 WP_172758339.1 competence type IV pilus assembly protein ComGB Machinery gene
  GE022_RS00855 (GE022_000855) comGC 143025..143351 (+) 327 WP_164405637.1 competence type IV pilus major pilin ComGC Machinery gene
  GE022_RS00860 (GE022_000860) comGD 143326..143754 (+) 429 WP_276509017.1 competence type IV pilus minor pilin ComGD Machinery gene
  GE022_RS00865 (GE022_000865) comGE 143762..144007 (+) 246 WP_051026419.1 competence type IV pilus minor pilin ComGE -
  GE022_RS00870 (GE022_000870) comGF 143988..144428 (+) 441 WP_003046192.1 competence type IV pilus minor pilin ComGF Machinery gene
  GE022_RS00875 (GE022_000875) comGG 144406..144786 (+) 381 WP_003046193.1 competence type IV pilus minor pilin ComGG -
  GE022_RS00880 (GE022_000880) comGH 144836..145789 (+) 954 WP_164405635.1 class I SAM-dependent methyltransferase Machinery gene
  GE022_RS00885 (GE022_000885) - 145848..147044 (+) 1197 WP_093998734.1 acetate kinase -
  GE022_RS00890 (GE022_000890) - 147336..147542 (+) 207 WP_164405634.1 helix-turn-helix transcriptional regulator -
  GE022_RS00895 (GE022_000895) - 147543..147683 (+) 141 Protein_131 type II CAAX prenyl endopeptidase Rce1 family protein -
  GE022_RS10595 - 147701..148138 (+) 438 WP_164228326.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16518.09 Da        Isoelectric Point: 10.2264

>NTDB_id=394477 GE022_RS00860 WP_276509017.1 143326..143754(+) (comGD) [Streptococcus canis strain HL_77_2]
MKLKNCNLKAFTLLETLLTLSVMSFIVLGLSFPVTSSYRRVQEHLFFIRFEHLYRHQQKVAILQQEKRVLTISSKEIRTE
DEGLKVPDSIRVKSSRQLVLDHMGGNHSLTKLTFETGEQRLSYQFYLGSGNYQKTSERLHSP

Nucleotide


Download         Length: 429 bp        

>NTDB_id=394477 GE022_RS00860 WP_276509017.1 143326..143754(+) (comGD) [Streptococcus canis strain HL_77_2]
ATGAAGCTCAAAAATTGCAACCTTAAAGCTTTTACGCTACTTGAAACTTTACTAACTTTATCGGTGATGAGCTTTATCGT
ACTGGGCTTATCTTTTCCAGTGACAAGTAGTTATCGGAGAGTTCAAGAGCATTTATTTTTCATCCGTTTTGAGCACCTTT
ACCGGCATCAGCAAAAGGTGGCCATTTTACAGCAAGAAAAGCGGGTTCTAACGATTTCTTCTAAAGAAATTAGGACAGAA
GATGAGGGCTTAAAAGTACCTGATTCGATAAGGGTTAAAAGTAGTCGCCAGCTAGTCCTTGATCACATGGGAGGCAATCA
TTCGTTGACCAAGTTAACTTTTGAGACAGGGGAACAACGTCTCAGCTACCAATTTTATCTGGGGAGTGGAAATTATCAAA
AAACAAGTGAAAGGTTACATAGCCCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus gordonii str. Challis substr. CH1

41.912

95.775

0.401
  comGD Streptococcus mutans UA140

44.186

90.845

0.401
  comGD Streptococcus mutans UA159

44.186

90.845

0.401
  comGD/cglD Streptococcus mitis NCTC 12261

39.416

96.479

0.38
  comGD/cglD Streptococcus mitis SK321

40.769

91.549

0.373
  comGD/cglD Streptococcus pneumoniae Rx1

40

91.549

0.366
  comGD/cglD Streptococcus pneumoniae D39

40

91.549

0.366
  comGD/cglD Streptococcus pneumoniae R6

40

91.549

0.366