Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   FPL20_RS05915 Genome accession   NZ_CP045478
Coordinates   1114185..1114526 (+) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain JD-014     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1109185..1119526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL20_RS05875 (FPL20_GE01087) rapD 1109319..1110383 (-) 1065 WP_003227782.1 aspartate phosphatase RapD -
  FPL20_RS05880 (FPL20_GE01088) fabZ 1110575..1111000 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  FPL20_RS05885 (FPL20_GE01089) mscL 1111073..1111465 (+) 393 WP_003242893.1 large conductance mechanosensitive channel protein MscL -
  FPL20_RS05890 (FPL20_GE01090) ywpD 1111512..1112348 (-) 837 WP_003227787.1 sensor histidine kinase -
  FPL20_RS22670 - 1112382..1112534 (+) 153 Protein_1117 prealbumin-like fold domain-containing protein -
  FPL20_RS05900 (FPL20_GE01091) - 1112608..1113000 (+) 393 Protein_1118 class A sortase -
  FPL20_RS05905 (FPL20_GE01092) ywpF 1113140..1113550 (-) 411 WP_003227794.1 YwpF-like family protein -
  FPL20_RS05910 (FPL20_GE01093) ywpG 1113725..1114108 (+) 384 WP_003227796.1 DynA interaction protein YwpG -
  FPL20_RS05915 (FPL20_GE01094) ssbB 1114185..1114526 (+) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  FPL20_RS05920 (FPL20_GE01095) glcR 1114750..1115526 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  FPL20_RS05925 (FPL20_GE01096) ywpJ 1115532..1116389 (+) 858 WP_003242946.1 phosphatase YwpJ -
  FPL20_RS05930 (FPL20_GE01097) hepAB 1116515..1119283 (-) 2769 WP_003227803.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=394471 FPL20_RS05915 WP_003227798.1 1114185..1114526(+) (ssbB) [Bacillus subtilis strain JD-014]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=394471 FPL20_RS05915 WP_003227798.1 1114185..1114526(+) (ssbB) [Bacillus subtilis strain JD-014]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment