Detailed information NTG0394367

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: GE023_RS00345
• Genome accession: NZ_CP053789
• Coordinates: 56420..57418 (+)
• Length: 332 a.a.
• NCBI ID: WP_003046011.1
• Uniprot ID: -
• Organism: Streptococcus canis strain HL_98_2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 51420..62418

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GE023_RS00325 (GE023_000325)	purE	51793..52284 (+)	492	WP_159305220.1	5-(carboxyamino)imidazole ribonucleotide mutase	-
GE023_RS00330 (GE023_000330)	purK	52271..53341 (+)	1071	WP_159305219.1	5-(carboxyamino)imidazole ribonucleotide synthase	-
GE023_RS00335 (GE023_000335)	purB	53859..55151 (+)	1293	WP_003046005.1	adenylosuccinate lyase	-
GE023_RS00340 (GE023_000340)	comR	55288..56199 (+)	912	WP_003046007.1	helix-turn-helix domain-containing protein	Regulator
GE023_RS10745	comS	56286..56387 (+)	102	WP_201281440.1	quorum-sensing system DWW-type pheromone	Regulator
GE023_RS00345 (GE023_000345)	ruvB	56420..57418 (+)	999	WP_003046011.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
GE023_RS00350 (GE023_000350)	-	57559..58002 (+)	444	WP_159305976.1	low molecular weight protein-tyrosine-phosphatase	-
GE023_RS00355 (GE023_000355)	-	58019..58420 (+)	402	WP_003046016.1	MORN repeat-containing protein	-
GE023_RS00360 (GE023_000360)	-	58417..60192 (+)	1776	WP_159305977.1	acyltransferase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37398.89 Da
• Isoelectric Point: 4.6446

>NTDB_id=394367 GE023_RS00345 WP_003046011.1 56420..57418(+) (ruvB) [Streptococcus canis strain HL_98_2]
MARILDNDIMGDEELVERTLRPQYLREYIGQDKVKEQLTIFIKAAKLRDESLDHVLLFGPPGLGKTTMAFVIANELGVNV
KQTSGPAIEKAGDLVAILNDLEPGDVLFIDEIHRMPMAVEEVLYSAMEDFYIDIMIGAGDTSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQEADLTEIVERTADIFEMEIIHEAAQELACRSRGTPRIANRLLKRVRDYAQIVGDGVIT
TQITDKALTMLDVDREGLDYVDQKILRTMIEMYQGGPVGLGTLSVNIAEERDTVEDMYEPYLIQKGFLMRTRTGRVVTEK
AYHHLGYPYQSH

Nucleotide

• Length: 999 bp

>NTDB_id=394367 GE023_RS00345 WP_003046011.1 56420..57418(+) (ruvB) [Streptococcus canis strain HL_98_2]
ATGGCTAGAATTTTAGATAATGATATAATGGGGGACGAGGAGCTTGTTGAGCGAACTCTTCGTCCACAGTACTTGCGTGA
GTACATCGGGCAAGATAAAGTTAAAGAACAGTTAACCATTTTTATTAAAGCAGCTAAGCTGCGTGATGAGTCTTTGGATC
ATGTCTTGCTGTTTGGTCCTCCAGGGTTAGGGAAAACGACTATGGCATTTGTGATTGCTAATGAATTAGGGGTTAATGTG
AAGCAAACCTCAGGTCCAGCGATTGAAAAGGCTGGAGACTTGGTGGCCATTTTGAATGATTTGGAACCGGGGGATGTCTT
ATTTATTGATGAAATTCATCGCATGCCGATGGCTGTTGAGGAAGTGCTGTATAGCGCTATGGAAGATTTTTATATTGACA
TTATGATTGGTGCTGGAGATACCAGTCGAAGTGTTCATTTGGATTTACCGCCCTTTACGTTGATTGGTGCGACAACGCGA
GCTGGGATGTTATCAAATCCTTTGCGAGCTCGTTTTGGTATTACTGGACACATGGAGTATTATCAGGAAGCTGATTTGAC
TGAAATTGTGGAACGGACAGCGGATATTTTTGAAATGGAAATTATCCACGAGGCGGCCCAAGAGCTAGCTTGTCGCAGTC
GAGGAACCCCACGTATTGCCAATCGATTATTAAAACGAGTGCGTGACTATGCTCAAATTGTTGGAGATGGAGTGATTACG
ACGCAAATCACGGATAAGGCTTTAACCATGTTGGATGTTGACCGAGAAGGGCTTGATTATGTGGACCAAAAGATTTTACG
AACCATGATTGAAATGTATCAGGGTGGTCCGGTTGGTTTAGGCACTTTATCAGTTAATATTGCAGAAGAACGTGATACGG
TTGAAGACATGTATGAACCCTATTTAATTCAAAAAGGGTTTCTAATGCGTACGCGCACTGGTCGTGTAGTAACTGAAAAA
GCCTATCATCATCTTGGCTACCCTTACCAAAGCCATTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	89.091	99.398	0.886
ruvB	Streptococcus pneumoniae R6	89.091	99.398	0.886
ruvB	Streptococcus pneumoniae D39	89.091	99.398	0.886
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.991	97.289	0.593
ruvB	Helicobacter pylori 26695	50	98.193	0.491
ruvB	Synechocystis sp. PCC 6803	49.84	94.277	0.47