Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HIBPF_RS09085 Genome accession   NC_014920
Coordinates   1814336..1815133 (+) Length   265 a.a.
NCBI ID   WP_013526473.1    Uniprot ID   -
Organism   Haemophilus influenzae F3031     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1809336..1820133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIBPF_RS09065 (HIBPF18890) recR 1809505..1810107 (-) 603 WP_005626527.1 recombination mediator RecR -
  HIBPF_RS09070 (HIBPF18900) - 1810238..1810567 (-) 330 WP_013526470.1 YbaB/EbfC family nucleoid-associated protein -
  HIBPF_RS09075 (HIBPF18910) - 1810719..1811564 (-) 846 WP_013526471.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  HIBPF_RS09080 (HIBPF18920) - 1811637..1814237 (-) 2601 WP_013526472.1 penicillin-binding protein 1A -
  HIBPF_RS09085 (HIBPF18930) comA 1814336..1815133 (+) 798 WP_013526473.1 pilus assembly protein PilM Machinery gene
  HIBPF_RS09090 (HIBPF18940) comB 1815134..1815640 (+) 507 WP_013526474.1 hypothetical protein Machinery gene
  HIBPF_RS09095 comC 1815637..1816158 (+) 522 WP_041174979.1 competence protein ComC Machinery gene
  HIBPF_RS09100 (HIBPF18960) comD 1816155..1816568 (+) 414 WP_013526476.1 pilus assembly protein PilP Machinery gene
  HIBPF_RS09105 (HIBPF18970) comE 1816578..1817915 (+) 1338 WP_013526477.1 type IV pilus secretin PilQ family protein Machinery gene
  HIBPF_RS09110 (HIBPF18980) - 1817928..1818614 (+) 687 WP_013526478.1 ComF family protein -
  HIBPF_RS09115 (HIBPF18990) nfuA 1818690..1819286 (+) 597 WP_013526479.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31443.70 Da        Isoelectric Point: 6.2326

>NTDB_id=39425 HIBPF_RS09085 WP_013526473.1 1814336..1815133(+) (comA) [Haemophilus influenzae F3031]
MQFSLKNHRTLQIGIHRKQGYFDFVWFDDLEQPQSYQSFVNDRDFKNRFLQQLKTQCQGKTFPLRFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPISLDELWFDYRSTPLKQGFRLDVTAIRKSTAQTYLQDFQPFKINVLDVASNAILRA
FQYLLNEQMRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFSERFEGQLEQVFVYQIPSSHTPLPENWQRV
ETDLPFIAFGNALWQKDLYQQKVSS

Nucleotide


Download         Length: 798 bp        

>NTDB_id=39425 HIBPF_RS09085 WP_013526473.1 1814336..1815133(+) (comA) [Haemophilus influenzae F3031]
ATGCAATTCTCCCTGAAAAATCACCGCACTTTACAAATCGGCATTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAACAGCCACAAAGTTATCAAAGCTTTGTCAATGATCGTGATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATGTCAAGGGAAAACCTTTCCTTTGCGGTTTGTGGCAAGCATTCCCGCTCACTTAACTTGGTCAAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTCTTT
AGATGAATTATGGTTTGATTATCGATCTACCCCGTTAAAGCAAGGTTTTCGATTAGACGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCGTCAAATGCTATTTTGCGTGCA
TTTCAGTATTTGTTGAATGAACAAATGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGTTTGGCGAT
TTGTGAAAGATCGCAGCAATCGCAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTAGCGAGCGTT
TTGAAGGGCAACTTGAACAAGTTTTTGTGTATCAAATTCCCTCAAGTCATACCCCATTACCAGAAAATTGGCAGCGAGTA
GAAACGGATTTGCCCTTTATTGCATTCGGCAACGCGCTATGGCAAAAAGATTTATATCAACAAAAAGTGAGTAGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

95.094

100

0.951
  comA Haemophilus influenzae Rd KW20

92.453

100

0.925

Multiple sequence alignment