Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | HIBPF_RS09100 | Genome accession | NC_014920 |
| Coordinates | 1816155..1816568 (+) | Length | 137 a.a. |
| NCBI ID | WP_013526476.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae F3031 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1811155..1821568
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HIBPF_RS09080 (HIBPF18920) | - | 1811637..1814237 (-) | 2601 | WP_013526472.1 | penicillin-binding protein 1A | - |
| HIBPF_RS09085 (HIBPF18930) | comA | 1814336..1815133 (+) | 798 | WP_013526473.1 | pilus assembly protein PilM | Machinery gene |
| HIBPF_RS09090 (HIBPF18940) | comB | 1815134..1815640 (+) | 507 | WP_013526474.1 | hypothetical protein | Machinery gene |
| HIBPF_RS09095 | comC | 1815637..1816158 (+) | 522 | WP_041174979.1 | competence protein ComC | Machinery gene |
| HIBPF_RS09100 (HIBPF18960) | comD | 1816155..1816568 (+) | 414 | WP_013526476.1 | pilus assembly protein PilP | Machinery gene |
| HIBPF_RS09105 (HIBPF18970) | comE | 1816578..1817915 (+) | 1338 | WP_013526477.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| HIBPF_RS09110 (HIBPF18980) | - | 1817928..1818614 (+) | 687 | WP_013526478.1 | ComF family protein | - |
| HIBPF_RS09115 (HIBPF18990) | nfuA | 1818690..1819286 (+) | 597 | WP_013526479.1 | Fe-S biogenesis protein NfuA | - |
| HIBPF_RS09120 (HIBPF19000) | nudC | 1819353..1820147 (+) | 795 | WP_013526480.1 | NAD(+) diphosphatase | - |
| HIBPF_RS09125 (HIBPF19010) | - | 1820183..1820773 (+) | 591 | WP_013526481.1 | YjaG family protein | - |
| HIBPF_RS09130 (HIBPF19020) | - | 1820913..1821185 (+) | 273 | WP_013526482.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15643.75 Da Isoelectric Point: 4.4355
>NTDB_id=39428 HIBPF_RS09100 WP_013526476.1 1816155..1816568(+) (comD) [Haemophilus influenzae F3031]
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNVQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNVQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=39428 HIBPF_RS09100 WP_013526476.1 1816155..1816568(+) (comD) [Haemophilus influenzae F3031]
ATGAAGTATTGGTTTTTCCTAACTGCATTGCTTTTTATAAATTGCAGTTGGGGGCAGGATCCTTTTGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGTACAAACCGTAATGGAACAGACTGAAATAATTTCCTCAGATGTCCCTAATAATCTAT
GCGGAGCTGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGTGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGGGAGCAATGTGATAGCAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTAACTGCATTGCTTTTTATAAATTGCAGTTGGGGGCAGGATCCTTTTGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGTACAAACCGTAATGGAACAGACTGAAATAATTTCCTCAGATGTCCCTAATAATCTAT
GCGGAGCTGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTATTGCAAGATCAGGCTTTGCAAGTTTACAGTGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTCGGGGAGCAATGTGATAGCAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
94.891 |
100 |
0.949 |
| comD | Haemophilus influenzae 86-028NP |
94.161 |
100 |
0.942 |