Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BSP_RS07260 Genome accession   NZ_CP045456
Coordinates   1477306..1477800 (+) Length   164 a.a.
NCBI ID   WP_054766868.1    Uniprot ID   -
Organism   Brevundimonas sp. Bb-A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1472306..1482800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSP_RS07245 (BSP_07280) - 1473229..1475931 (+) 2703 WP_152949783.1 transcriptional regulator -
  BSP_RS07250 (BSP_07285) - 1476010..1476696 (+) 687 WP_152949784.1 hypothetical protein -
  BSP_RS07255 (BSP_07290) - 1476696..1477118 (+) 423 WP_152949785.1 hypothetical protein -
  BSP_RS07260 (BSP_07295) ssb 1477306..1477800 (+) 495 WP_054766868.1 single-stranded DNA-binding protein Machinery gene
  BSP_RS07265 (BSP_07300) - 1477849..1478265 (+) 417 WP_227976080.1 thiol-disulfide oxidoreductase DCC family protein -
  BSP_RS07270 (BSP_07305) - 1478262..1479563 (+) 1302 WP_152949786.1 SDR family oxidoreductase -
  BSP_RS07275 (BSP_07310) - 1479560..1480030 (+) 471 WP_152949787.1 DUF2269 domain-containing protein -
  BSP_RS07280 (BSP_07315) - 1480035..1480415 (-) 381 WP_054765110.1 type II toxin-antitoxin system VapC family toxin -
  BSP_RS16200 (BSP_07320) - 1480412..1480690 (-) 279 WP_183218192.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  BSP_RS07285 (BSP_07325) - 1480787..1481710 (+) 924 WP_152949789.1 DMT family transporter -
  BSP_RS07290 (BSP_07330) - 1481740..1482270 (+) 531 WP_224764363.1 DUF1003 domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17841.70 Da        Isoelectric Point: 5.9696

>NTDB_id=394231 BSP_RS07260 WP_054766868.1 1477306..1477800(+) (ssb) [Brevundimonas sp. Bb-A]
MAGSVNKVILVGNLGRDPEIRSMPNGDRIANLSIATSETWRDKSTGERKEKTEWHRVVIFNDNIVKVVENYVKKGSTVYV
EGALQTRKWTDQQGVEKYSTEIVVSRFKGELTMLGGRSEGGASQGGGYGGGRGDDDYSSGFSTGGANRPSGPKESYDLND
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=394231 BSP_RS07260 WP_054766868.1 1477306..1477800(+) (ssb) [Brevundimonas sp. Bb-A]
ATGGCGGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTGGGCCGCGATCCTGAAATCCGGTCGATGCCGAACGGCGA
CCGCATCGCCAACCTGTCCATCGCCACCTCGGAAACCTGGCGCGACAAGTCGACCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGGGTCGTCATCTTCAACGACAACATCGTCAAGGTCGTCGAGAACTATGTGAAGAAGGGCTCGACCGTCTATGTC
GAGGGCGCGCTCCAGACCCGTAAATGGACCGATCAGCAGGGCGTCGAAAAGTATTCGACCGAGATCGTGGTCAGCCGCTT
CAAGGGTGAACTGACCATGCTGGGCGGCCGGTCCGAGGGCGGCGCCTCCCAAGGCGGCGGTTACGGCGGCGGTCGCGGCG
ACGACGACTATTCCTCGGGCTTCTCCACCGGCGGCGCCAACCGCCCCAGCGGCCCCAAGGAAAGCTACGACCTGAACGAC
GACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.619

100

0.549
  ssb Vibrio cholerae strain A1552

47.977

100

0.506
  ssb Neisseria gonorrhoeae MS11

41.341

100

0.451
  ssb Neisseria meningitidis MC58

41.341

100

0.451

Multiple sequence alignment