Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GCU76_RS22650 Genome accession   NZ_CP045425
Coordinates   4199982..4200500 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain JAAA     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4194982..4205500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS22620 yyaJ 4195487..4196842 (+) 1356 WP_041337895.1 MFS transporter -
  GCU76_RS22625 maa 4196876..4197430 (-) 555 WP_095844123.1 sugar O-acetyltransferase -
  GCU76_RS22630 yyaH 4197446..4197826 (-) 381 WP_015250784.1 VOC family protein -
  GCU76_RS22635 ccpB 4197882..4198817 (-) 936 WP_152425664.1 transcriptional regulator CcpB -
  GCU76_RS22640 xth 4198876..4199634 (-) 759 WP_121549260.1 exodeoxyribonuclease III -
  GCU76_RS22645 rpsR 4199699..4199938 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  GCU76_RS22650 ssbA 4199982..4200500 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  GCU76_RS22655 rpsF 4200541..4200828 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  GCU76_RS22660 ychF 4200939..4202039 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  GCU76_RS22665 yyaE 4202166..4204169 (-) 2004 WP_121549262.1 molybdopterin-dependent oxidoreductase -
  GCU76_RS22670 yyzM 4204220..4204426 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=394024 GCU76_RS22650 WP_003219228.1 4199982..4200500(-) (ssbA) [Bacillus subtilis strain JAAA]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=394024 GCU76_RS22650 WP_003219228.1 4199982..4200500(-) (ssbA) [Bacillus subtilis strain JAAA]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment