Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GDR53_RS18280 Genome accession   NZ_CP045422
Coordinates   3762597..3763100 (+) Length   167 a.a.
NCBI ID   WP_193335845.1    Uniprot ID   -
Organism   Devosia beringensis strain S02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3757597..3768100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDR53_RS18265 - 3759822..3760037 (-) 216 WP_193335842.1 hypothetical protein -
  GDR53_RS18270 - 3760034..3760678 (-) 645 WP_193335843.1 LysE family translocator -
  GDR53_RS18275 - 3760761..3762263 (-) 1503 WP_193335844.1 acetyl-CoA hydrolase/transferase family protein -
  GDR53_RS18280 ssb 3762597..3763100 (+) 504 WP_193335845.1 single-stranded DNA-binding protein Machinery gene
  GDR53_RS18285 - 3763269..3764597 (-) 1329 WP_232846669.1 sensor domain-containing diguanylate cyclase -
  GDR53_RS18290 - 3764713..3765240 (-) 528 WP_193335846.1 hypothetical protein -
  GDR53_RS18295 - 3765373..3767736 (-) 2364 WP_193335847.1 RND family transporter -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 17724.51 Da        Isoelectric Point: 5.9520

>NTDB_id=393930 GDR53_RS18280 WP_193335845.1 3762597..3763100(+) (ssb) [Devosia beringensis strain S02]
MAGSVNKVILVGNLGADPEIRNLPSGGKVVNLSIATSENWKDKNTGERREKTEWHRVVIFSEGLARVAESYLKKGSKVYI
EGQLQTRKWQDQSGADKYSTEVVLQGFNSNLTLLDGRGDGDSAGGGDGGGFRGVRDNNNGGGGGGARRPQSNAPAFEPGG
MDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=393930 GDR53_RS18280 WP_193335845.1 3762597..3763100(+) (ssb) [Devosia beringensis strain S02]
ATGGCAGGCAGTGTCAACAAGGTGATTTTGGTCGGCAATCTTGGTGCCGATCCGGAAATCAGGAATTTGCCCAGTGGCGG
CAAGGTGGTCAATCTGTCGATTGCCACCTCCGAAAACTGGAAGGACAAGAATACCGGCGAGCGCCGCGAAAAGACCGAAT
GGCACCGCGTGGTGATCTTCTCGGAAGGTCTGGCCCGCGTGGCAGAGAGCTACCTCAAGAAGGGCAGCAAGGTCTATATC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGTCCGGCGCCGACAAGTACTCGACCGAAGTGGTGCTGCAGGGCTT
TAACTCGAACCTGACGCTGCTGGACGGCCGTGGTGACGGCGACAGTGCCGGCGGCGGCGATGGCGGCGGCTTCCGCGGCG
TGCGCGACAACAATAATGGCGGTGGCGGTGGCGGCGCTCGTCGGCCCCAGTCCAACGCCCCGGCCTTCGAGCCCGGCGGC
ATGGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.852

100

0.587
  ssb Vibrio cholerae strain A1552

52.809

100

0.563
  ssb Neisseria meningitidis MC58

38.122

100

0.413
  ssb Neisseria gonorrhoeae MS11

37.569

100

0.407

Multiple sequence alignment