Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIU83_RS16205 Genome accession   NZ_CP045417
Coordinates   3574200..3574832 (-) Length   210 a.a.
NCBI ID   WP_152485000.1    Uniprot ID   -
Organism   Halomonas sp. THAF5a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3569200..3579832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU83_RS16185 (FIU83_16195) fabA 3570682..3571197 (+) 516 WP_152484996.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  FIU83_RS16190 (FIU83_16200) fabB 3571211..3572428 (+) 1218 WP_152484997.1 beta-ketoacyl-ACP synthase I -
  FIU83_RS16195 (FIU83_16205) - 3572548..3573303 (-) 756 WP_152484998.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  FIU83_RS16200 (FIU83_16210) - 3573300..3574175 (-) 876 WP_152484999.1 sugar nucleotide-binding protein -
  FIU83_RS16205 (FIU83_16215) ssb 3574200..3574832 (-) 633 WP_152485000.1 single-stranded DNA-binding protein Machinery gene
  FIU83_RS16210 (FIU83_16220) - 3574913..3576307 (-) 1395 WP_152485001.1 MFS transporter -
  FIU83_RS16215 (FIU83_16225) uvrA 3576467..3579328 (+) 2862 WP_152485002.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22275.28 Da        Isoelectric Point: 5.2423

>NTDB_id=393887 FIU83_RS16205 WP_152485000.1 3574200..3574832(-) (ssb) [Halomonas sp. THAF5a]
MARGVNKVILIGNLGQDPEVRFTPSGTAVANLNLATTDTWMDRQSGQRQERTEWHRVVMFNKLAEIAQQYLKKGSKLYVE
GRLQTRKWQDQNGQDKYSTEIVANDMQMLDGRGDGGQGGGFGGPQGGGYGGGQQGGGRPPQGGQYGGQPPQQGGGFGGQQ
PPQQGGQYGGGQPQRPAPQPAPPQQGGQQGGNYGAPDPGSFDDFDDEIPF

Nucleotide


Download         Length: 633 bp        

>NTDB_id=393887 FIU83_RS16205 WP_152485000.1 3574200..3574832(-) (ssb) [Halomonas sp. THAF5a]
ATGGCCCGTGGCGTCAACAAGGTCATCCTCATCGGCAACCTCGGCCAGGACCCTGAGGTGCGCTTCACGCCCTCCGGCAC
CGCCGTGGCCAACCTCAACCTGGCCACCACGGACACCTGGATGGATCGCCAGAGCGGCCAGCGCCAGGAGCGCACCGAGT
GGCACCGGGTGGTGATGTTCAACAAGCTGGCCGAGATCGCCCAGCAGTACCTCAAGAAGGGCTCCAAGCTCTACGTCGAG
GGGCGCCTGCAGACCCGCAAGTGGCAGGACCAGAACGGCCAGGACAAGTACAGCACCGAGATCGTCGCCAACGACATGCA
GATGCTCGACGGCCGCGGCGACGGCGGCCAGGGCGGCGGCTTCGGCGGCCCGCAGGGCGGTGGCTATGGCGGCGGCCAGC
AGGGCGGCGGGCGTCCCCCCCAGGGCGGCCAGTACGGCGGCCAGCCCCCGCAGCAGGGCGGCGGTTTCGGCGGCCAGCAG
CCGCCCCAGCAGGGCGGCCAGTACGGTGGCGGCCAGCCCCAGCGTCCGGCCCCGCAGCCGGCCCCGCCCCAGCAGGGTGG
CCAGCAGGGCGGCAACTATGGCGCCCCGGACCCGGGCAGCTTCGACGATTTCGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.533

100

0.505
  ssb Glaesserella parasuis strain SC1401

46.86

98.571

0.462
  ssb Neisseria meningitidis MC58

42.512

98.571

0.419
  ssb Neisseria gonorrhoeae MS11

42.512

98.571

0.419

Multiple sequence alignment