Detailed information NTG0393851

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FIU84_RS04965
• Genome accession: NZ_CP045416
• Coordinates: 1045172..1046038 (+)
• Length: 288 a.a.
• NCBI ID: WP_152480903.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain THAF7b
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1040172..1051038

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIU84_RS04945	-	1041142..1041606 (-)	465	WP_152480900.1	hypothetical protein	-
FIU84_RS21720 (FIU84_04965)	-	1041633..1041818 (-)	186	WP_152480901.1	type IV pilin protein	-
FIU84_RS04955 (FIU84_04970)	pilB	1042242..1043945 (+)	1704	WP_152480902.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FIU84_RS04960 (FIU84_04975)	pilC	1043948..1045168 (+)	1221	WP_063544459.1	type II secretion system F family protein	Machinery gene
FIU84_RS04965 (FIU84_04980)	pilD	1045172..1046038 (+)	867	WP_152480903.1	A24 family peptidase	Machinery gene
FIU84_RS04970 (FIU84_04985)	coaE	1046170..1046778 (+)	609	WP_152480904.1	dephospho-CoA kinase	-
FIU84_RS04975 (FIU84_04990)	yacG	1046775..1046972 (+)	198	WP_102840588.1	DNA gyrase inhibitor YacG	-
FIU84_RS04980 (FIU84_04995)	-	1046995..1047675 (-)	681	WP_102840589.1	energy-coupling factor ABC transporter permease	-
FIU84_RS04985 (FIU84_05005)	-	1047714..1048750 (-)	1037	Protein_977	NADP(H)-dependent aldo-keto reductase	-
FIU84_RS04990 (FIU84_05010)	rplM	1049194..1049622 (+)	429	WP_063544471.1	50S ribosomal protein L13	-
FIU84_RS04995 (FIU84_05015)	rpsI	1049637..1050029 (+)	393	WP_013981948.1	30S ribosomal protein S9	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32145.26 Da
• Isoelectric Point: 7.6233

>NTDB_id=393851 FIU84_RS04965 WP_152480903.1 1045172..1046038(+) (pilD) [Stutzerimonas frequens strain THAF7b]
MIYELMASHVLAFVLSAAVLGLLVGSFLNVLIYRLPVMMQREWRVQAREILELPCEPVGERFNLLLPNSRCPHCAHRIRA
WENVPLVSWLFLRGKCSSCQAPISCRYPLVELACGVLSGYVAWHFGFSWQAAMMLLLTWGLLAMSMIDVDHQLLPDSLVL
PLLWLGLIVNHFGLFTSLESALWGAVTGYLSLWSVYWLFKLATGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVGA
VLGSILLKVQRAESGTPIPFGPYLAIAGWIALLWGDRITESYLQFARF

Nucleotide

• Length: 867 bp

>NTDB_id=393851 FIU84_RS04965 WP_152480903.1 1045172..1046038(+) (pilD) [Stutzerimonas frequens strain THAF7b]
ATGATCTACGAACTGATGGCCAGCCATGTGCTGGCCTTTGTTTTGTCTGCAGCTGTGCTCGGCCTGCTGGTTGGTAGTTT
CCTTAACGTCCTCATCTACCGGTTGCCGGTGATGATGCAGCGCGAATGGCGGGTGCAGGCGAGAGAAATTCTTGAGCTGC
CATGCGAACCGGTCGGTGAACGATTCAACCTGTTGCTACCGAATTCGCGCTGTCCGCATTGCGCTCATCGAATCCGCGCA
TGGGAAAACGTTCCGCTGGTCAGTTGGCTGTTCTTGCGTGGCAAGTGTTCATCCTGCCAGGCACCGATCAGTTGTCGTTA
CCCGCTGGTGGAGCTGGCATGCGGTGTGCTGTCCGGCTATGTGGCATGGCATTTCGGCTTTTCCTGGCAGGCCGCCATGA
TGCTATTGCTGACCTGGGGTCTGCTGGCGATGAGCATGATCGATGTCGATCATCAGTTATTGCCTGACTCGCTTGTACTG
CCCTTGTTGTGGCTGGGGTTGATCGTTAACCACTTCGGCTTGTTCACTTCGCTGGAAAGTGCGCTGTGGGGGGCGGTGAC
GGGTTATCTGAGTCTTTGGTCGGTGTACTGGCTTTTCAAGCTCGCCACCGGCAAAGAGGGCATGGGCTACGGCGACTTCA
AGCTGTTGGCGATGCTTGGGGCCTGGGGTGGCTGGCAGGTATTGCCGCTTACCATCCTGTTGTCGTCAGTGGTCGGAGCG
GTGCTGGGTTCCATTCTTTTGAAGGTCCAGCGTGCAGAAAGCGGCACGCCCATTCCCTTTGGCCCCTATCTGGCGATCGC
TGGGTGGATTGCGCTTCTTTGGGGTGACAGGATCACCGAGAGCTATCTGCAATTCGCCCGCTTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.064	98.264	0.531
pilD	Vibrio campbellii strain DS40M4	54.212	94.792	0.514
pilD	Neisseria gonorrhoeae MS11	54.373	91.319	0.497
pilD	Acinetobacter baumannii D1279779	51.439	96.528	0.497
pilD	Acinetobacter nosocomialis M2	51.439	96.528	0.497