Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIU84_RS03745 Genome accession   NZ_CP045416
Coordinates   793678..794169 (+) Length   163 a.a.
NCBI ID   WP_063544073.1    Uniprot ID   A0AA47E3M5
Organism   Stutzerimonas frequens strain THAF7b     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 788678..799169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU84_RS03735 (FIU84_03755) uvrA 789179..792016 (-) 2838 WP_063544069.1 excinuclease ABC subunit UvrA -
  FIU84_RS03740 (FIU84_03760) - 792148..793515 (+) 1368 WP_063544071.1 MFS transporter -
  FIU84_RS03745 (FIU84_03765) ssb 793678..794169 (+) 492 WP_063544073.1 single-stranded DNA-binding protein Machinery gene
  FIU84_RS03750 (FIU84_03770) - 794181..795065 (+) 885 WP_063544075.1 sugar nucleotide-binding protein -
  FIU84_RS03755 (FIU84_03775) - 795058..795987 (+) 930 WP_063544077.1 NAD-dependent epimerase/dehydratase family protein -
  FIU84_RS03760 (FIU84_03780) - 796058..796741 (-) 684 WP_063544079.1 OmpW family protein -
  FIU84_RS03765 (FIU84_03785) - 796926..797711 (+) 786 WP_152480821.1 DUF3450 domain-containing protein -
  FIU84_RS03770 (FIU84_03790) - 797708..799054 (+) 1347 WP_152480822.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18341.41 Da        Isoelectric Point: 5.9492

>NTDB_id=393848 FIU84_RS03745 WP_063544073.1 793678..794169(+) (ssb) [Stutzerimonas frequens strain THAF7b]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGNSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=393848 FIU84_RS03745 WP_063544073.1 793678..794169(+) (ssb) [Stutzerimonas frequens strain THAF7b]
ATGGCCAGAGGGGTGAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAAGACAAGCAGACCGGTCAGCTGCAAGAGCGTACCGAGT
GGCACCGTGTGGTGCTGTTCGGCAAGGTCGCCGAAATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGTCGCCTGCAGACGCGCGAGTGGGAGAAGGATGGCGTCAAGCGCTACACCACCGAAATCGTCGTCGACATGAATGGCAC
CATGCAGCTGCTCGGCGGCCGTGGTGGCAATTCCGACGATGCGCCACGCCAGCCGCGCCCGCAGCGCGAGCCGCAGCAGG
CCCCGCGTCAGCAGGCCCAGCCGCAGCAGCCTGCTGCCCGGCAGCAGCCCGCGCCGGACTATGACAGCTTCGACGACGAC
ATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.571

100

0.607
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.521
  ssb Neisseria meningitidis MC58

47.159

100

0.509
  ssb Glaesserella parasuis strain SC1401

45.856

100

0.509

Multiple sequence alignment