Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIU85_RS01530 Genome accession   NZ_CP045410
Coordinates   306766..307269 (+) Length   167 a.a.
NCBI ID   WP_152495589.1    Uniprot ID   -
Organism   Roseovarius sp. THAF8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 301766..312269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU85_RS01505 (FIU85_01545) miaA 301893..302786 (+) 894 WP_152495588.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  FIU85_RS01510 (FIU85_01550) - 302895..303692 (+) 798 WP_152492386.1 AraC family transcriptional regulator -
  FIU85_RS01515 (FIU85_01555) - 303809..305476 (+) 1668 WP_254702972.1 ABC transporter substrate-binding protein -
  FIU85_RS01520 (FIU85_01560) - 305521..305916 (+) 396 WP_152498142.1 cupin domain-containing protein -
  FIU85_RS01525 (FIU85_01565) - 305932..306528 (-) 597 WP_152492384.1 lytic transglycosylase domain-containing protein -
  FIU85_RS01530 (FIU85_01570) ssb 306766..307269 (+) 504 WP_152495589.1 single-stranded DNA-binding protein Machinery gene
  FIU85_RS01535 (FIU85_01575) - 307284..307589 (+) 306 WP_152495590.1 hypothetical protein -
  FIU85_RS21870 (FIU85_01580) - 307594..307731 (-) 138 WP_172978751.1 hypothetical protein -
  FIU85_RS01540 (FIU85_01585) - 307770..308681 (+) 912 WP_152495591.1 GNAT family N-acetyltransferase -
  FIU85_RS01545 (FIU85_01590) typA 308752..310572 (+) 1821 WP_152495592.1 translational GTPase TypA -
  FIU85_RS01550 (FIU85_01595) - 310576..310929 (+) 354 WP_152495593.1 cupin domain-containing protein -
  FIU85_RS01555 (FIU85_01600) - 310934..311479 (-) 546 WP_152495594.1 histidine phosphatase family protein -
  FIU85_RS01560 (FIU85_01605) - 311509..311976 (-) 468 WP_152498143.1 MOSC domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18200.88 Da        Isoelectric Point: 5.3474

>NTDB_id=393835 FIU85_RS01530 WP_152495589.1 306766..307269(+) (ssb) [Roseovarius sp. THAF8]
MAGSVNKVILIGNLGRDPEVRTFQNGGKVCNLRIATSENWKDRNTGERRERTEWHTVAIFNEALVRLAEQYLKKGSKVYI
EGKLETRKWQDQSGQDRYSTEVVLRPYAGEMTFLDGRDSGGGGGGGGYGGGSGGGYDQDYGGGPSGPSDQGRSQPSPSRD
YDDEIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=393835 FIU85_RS01530 WP_152495589.1 306766..307269(+) (ssb) [Roseovarius sp. THAF8]
ATGGCCGGTTCCGTCAACAAAGTCATTCTCATCGGAAACCTGGGGCGCGACCCCGAGGTGCGCACGTTCCAGAACGGCGG
CAAGGTGTGCAACCTGCGCATCGCCACGTCCGAGAACTGGAAGGACCGCAACACTGGCGAACGGCGCGAACGCACCGAAT
GGCACACCGTGGCGATCTTCAACGAGGCGCTCGTGCGCCTGGCCGAGCAATACCTGAAAAAAGGCTCCAAGGTCTATATC
GAGGGCAAGCTGGAAACCCGCAAATGGCAGGACCAGTCCGGCCAGGACCGCTATTCGACCGAGGTCGTGCTGCGCCCCTA
TGCCGGCGAGATGACCTTCCTCGACGGCCGTGACAGCGGCGGCGGCGGTGGTGGTGGCGGCTATGGCGGCGGCAGCGGCG
GTGGCTATGACCAGGATTACGGCGGCGGGCCGTCCGGCCCGTCCGACCAGGGCCGCTCGCAACCCTCGCCCTCGCGCGAC
TACGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.273

100

0.551
  ssb Glaesserella parasuis strain SC1401

47.849

100

0.533
  ssb Neisseria meningitidis MC58

45.251

100

0.485
  ssb Neisseria gonorrhoeae MS11

45.251

100

0.485

Multiple sequence alignment