Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIU86_RS08640 Genome accession   NZ_CP045404
Coordinates   1749227..1749730 (-) Length   167 a.a.
NCBI ID   WP_152474709.1    Uniprot ID   A0A5P9I1T5
Organism   Roseovarius sp. THAF9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1744227..1754730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU86_RS08610 (FIU86_08690) - 1744256..1744801 (+) 546 WP_152474703.1 histidine phosphatase family protein -
  FIU86_RS08615 (FIU86_08695) - 1744808..1745494 (-) 687 WP_172977474.1 DUF6639 family protein -
  FIU86_RS08620 (FIU86_08700) - 1745568..1745921 (-) 354 WP_152474705.1 cupin domain-containing protein -
  FIU86_RS08625 (FIU86_08705) typA 1745925..1747745 (-) 1821 WP_152474706.1 translational GTPase TypA -
  FIU86_RS08630 (FIU86_08710) - 1747816..1748718 (-) 903 WP_152474707.1 GNAT family N-acetyltransferase -
  FIU86_RS22540 (FIU86_08715) - 1748765..1748902 (+) 138 WP_216647211.1 hypothetical protein -
  FIU86_RS08635 (FIU86_08720) - 1748907..1749212 (-) 306 WP_152474708.1 hypothetical protein -
  FIU86_RS08640 (FIU86_08725) ssb 1749227..1749730 (-) 504 WP_152474709.1 single-stranded DNA-binding protein Machinery gene
  FIU86_RS08645 (FIU86_08730) - 1749969..1750565 (+) 597 WP_152474710.1 lytic transglycosylase domain-containing protein -
  FIU86_RS08650 (FIU86_08735) - 1750581..1750976 (-) 396 WP_152474711.1 cupin domain-containing protein -
  FIU86_RS08655 (FIU86_08740) - 1751021..1752688 (-) 1668 WP_254703977.1 ABC transporter substrate-binding protein -
  FIU86_RS08660 (FIU86_08745) - 1752807..1753604 (-) 798 WP_152474712.1 AraC family transcriptional regulator -
  FIU86_RS08665 (FIU86_08750) miaA 1753702..1754583 (-) 882 WP_152474713.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18190.85 Da        Isoelectric Point: 5.3474

>NTDB_id=393831 FIU86_RS08640 WP_152474709.1 1749227..1749730(-) (ssb) [Roseovarius sp. THAF9]
MAGSVNKVILIGNLGRDPEVRTFQNGGKVCNLRIATSENWKDRNTGERRERTEWHTVAIFNEALVRLAEQYLKKGSKVYI
EGKLETRKWQDQSGQDRYSTEVVLRPYAGEMTFLDGRDSGGGGGGGGYGGGSGGGYDQDYGGGSSGPSDQGRSQPSPSRD
YDDEIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=393831 FIU86_RS08640 WP_152474709.1 1749227..1749730(-) (ssb) [Roseovarius sp. THAF9]
ATGGCCGGTTCCGTCAACAAAGTCATTCTCATCGGCAACCTGGGACGCGACCCCGAGGTGCGCACGTTCCAGAACGGCGG
CAAAGTGTGCAACCTGCGCATCGCCACGTCCGAGAACTGGAAGGACCGCAACACCGGCGAGCGGCGCGAACGCACCGAAT
GGCACACCGTTGCCATCTTCAACGAAGCGCTGGTGCGGCTGGCCGAGCAATATCTGAAAAAAGGTTCCAAGGTCTATATC
GAGGGCAAGCTGGAGACCCGTAAGTGGCAGGATCAGTCCGGCCAGGATCGCTATTCGACCGAAGTCGTGCTGCGCCCCTA
CGCGGGCGAGATGACCTTCCTCGACGGCCGCGACAGCGGCGGCGGTGGTGGTGGCGGCGGCTATGGCGGCGGCAGCGGCG
GTGGCTATGATCAGGACTACGGCGGCGGCTCGTCGGGCCCGTCCGACCAGGGCCGCTCGCAACCCTCGCCATCGCGCGAC
TACGACGACGAGATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9I1T5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.705

100

0.545
  ssb Glaesserella parasuis strain SC1401

47.849

100

0.533
  ssb Neisseria gonorrhoeae MS11

43.017

100

0.461
  ssb Neisseria meningitidis MC58

43.017

100

0.461

Multiple sequence alignment