Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIU90_RS04700 Genome accession   NZ_CP045392
Coordinates   945963..946496 (+) Length   177 a.a.
NCBI ID   WP_152433731.1    Uniprot ID   A0A5P9GQ10
Organism   Erythrobacter sp. THAF29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 940963..951496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU90_RS04665 (FIU90_04700) ribD 941087..942064 (-) 978 WP_370515222.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  FIU90_RS04670 (FIU90_04705) - 942070..942531 (-) 462 WP_152433725.1 hypothetical protein -
  FIU90_RS04675 (FIU90_04710) - 942596..943318 (-) 723 WP_152433726.1 M48 family metallopeptidase -
  FIU90_RS04680 (FIU90_04715) - 943315..943794 (-) 480 WP_152433727.1 YcgN family cysteine cluster protein -
  FIU90_RS04685 (FIU90_04720) - 943782..944420 (-) 639 WP_152433728.1 SCO family protein -
  FIU90_RS04690 (FIU90_04725) - 944492..945160 (+) 669 WP_152433729.1 ankyrin repeat domain-containing protein -
  FIU90_RS04695 (FIU90_04730) - 945162..945827 (+) 666 WP_152433730.1 COQ9 family protein -
  FIU90_RS04700 (FIU90_04735) ssb 945963..946496 (+) 534 WP_152433731.1 single-stranded DNA-binding protein Machinery gene
  FIU90_RS04705 (FIU90_04740) - 946544..947092 (-) 549 WP_152433732.1 YceD family protein -
  FIU90_RS04710 (FIU90_04745) - 947092..947619 (-) 528 WP_152433733.1 ubiquinol-cytochrome C chaperone family protein -
  FIU90_RS04715 (FIU90_04750) - 947837..948328 (+) 492 WP_152433734.1 outer membrane protein assembly factor BamE -
  FIU90_RS04720 (FIU90_04755) hslV 948371..948931 (+) 561 WP_152433735.1 ATP-dependent protease subunit HslV -
  FIU90_RS04725 (FIU90_04760) - 948989..950053 (+) 1065 WP_172970179.1 acyltransferase -
  FIU90_RS04730 (FIU90_04765) hslU 950063..951361 (+) 1299 WP_152433737.1 ATP-dependent protease ATPase subunit HslU -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18029.51 Da        Isoelectric Point: 4.9367

>NTDB_id=393747 FIU90_RS04700 WP_152433731.1 945963..946496(+) (ssb) [Erythrobacter sp. THAF29]
MAGSLNKVMLIGNLGADPEIRSFQNGGRVANLRIATSETWKDRNTGERQERTEWHTVAIFSEGLVNVVENYLKKGSKVYV
EGQLQTRKWQDQNGQDRYSTEVVLRGYNGTLTMLDGAGGGGGGGRSSGGGFGGGGGSGYGGAGGQGGGFGGGGQGGGGQG
GSQGGGGYDDLDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=393747 FIU90_RS04700 WP_152433731.1 945963..946496(+) (ssb) [Erythrobacter sp. THAF29]
ATGGCGGGTTCGCTCAACAAGGTCATGCTGATCGGCAATCTGGGTGCGGACCCGGAAATCCGCAGCTTCCAGAATGGTGG
CCGCGTTGCCAACCTGCGCATCGCCACCAGCGAGACGTGGAAAGACCGCAATACCGGGGAGCGTCAGGAACGCACCGAGT
GGCACACCGTCGCGATCTTTTCCGAAGGCCTGGTCAACGTGGTCGAAAACTACCTTAAGAAGGGCTCGAAGGTTTACGTC
GAAGGCCAGCTCCAGACACGTAAGTGGCAGGACCAGAACGGGCAGGATCGCTATTCGACCGAGGTTGTCCTGCGCGGCTA
TAACGGCACTTTGACCATGCTCGATGGTGCTGGCGGTGGCGGCGGAGGCGGTCGCTCGAGTGGAGGCGGCTTCGGCGGCG
GCGGTGGATCGGGCTATGGCGGCGCAGGCGGCCAGGGCGGCGGCTTTGGTGGCGGAGGCCAGGGCGGCGGCGGTCAAGGC
GGCAGCCAAGGTGGCGGCGGCTACGACGACCTCGACGACGACATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9GQ10

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52

98.87

0.514
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.508
  ssb Neisseria meningitidis MC58

37.569

100

0.384
  ssb Neisseria gonorrhoeae MS11

37.569

100

0.384

Multiple sequence alignment