Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIU92_RS06350 Genome accession   NZ_CP045384
Coordinates   1265560..1266048 (-) Length   162 a.a.
NCBI ID   WP_152457764.1    Uniprot ID   -
Organism   Ruegeria sp. THAF33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1260560..1271048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU92_RS06330 (FIU92_06395) - 1261028..1262542 (-) 1515 WP_152457760.1 hypothetical protein -
  FIU92_RS22740 (FIU92_06400) - 1262532..1262681 (-) 150 WP_171168466.1 hypothetical protein -
  FIU92_RS06335 (FIU92_06405) - 1262761..1263348 (+) 588 WP_152457761.1 shikimate kinase -
  FIU92_RS06340 (FIU92_06410) aroB 1263349..1264461 (+) 1113 WP_152457762.1 3-dehydroquinate synthase -
  FIU92_RS06345 (FIU92_06415) - 1264471..1265541 (-) 1071 WP_152457763.1 site-2 protease family protein -
  FIU92_RS06350 (FIU92_06420) ssb 1265560..1266048 (-) 489 WP_152457764.1 single-stranded DNA-binding protein Machinery gene
  FIU92_RS06355 (FIU92_06425) - 1266252..1266830 (+) 579 WP_152457765.1 lytic transglycosylase domain-containing protein -
  FIU92_RS06360 (FIU92_06430) - 1266928..1267890 (+) 963 WP_152457766.1 LuxR C-terminal-related transcriptional regulator -
  FIU92_RS06365 (FIU92_06435) - 1268021..1269007 (+) 987 WP_152457767.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17469.15 Da        Isoelectric Point: 5.3270

>NTDB_id=393735 FIU92_RS06350 WP_152457764.1 1265560..1266048(-) (ssb) [Ruegeria sp. THAF33]
MAGSVNKVILVGNLGRDPEVRSFQNGGKVCNLRIATSENWKDRNTGERRERTEWHSVAIFSEPLARIAEQYLRKGSKVYI
EGQLETRKWQDQSGQDRYTTEVVLRPYRGELTLLDSRGEGGGSGGGYGGGQAGGSGYGDPYGGPSSSPAPASGGIDDDEI
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=393735 FIU92_RS06350 WP_152457764.1 1265560..1266048(-) (ssb) [Ruegeria sp. THAF33]
ATGGCGGGTTCAGTCAACAAGGTCATTCTGGTAGGTAATCTTGGCCGCGACCCCGAGGTCCGGTCGTTCCAGAACGGCGG
AAAGGTTTGCAATCTGCGCATTGCCACGTCAGAGAACTGGAAAGACCGCAACACGGGCGAACGCCGCGAACGCACGGAAT
GGCACTCGGTCGCAATCTTCTCGGAACCGCTGGCCCGTATTGCAGAGCAATACCTGCGCAAAGGCAGCAAGGTTTATATC
GAAGGCCAGCTGGAAACCCGAAAATGGCAGGATCAGTCCGGGCAAGACCGTTATACAACCGAGGTTGTTCTGCGCCCCTA
CCGCGGTGAATTGACCTTGCTCGACAGCCGCGGCGAAGGCGGCGGCAGCGGCGGTGGTTACGGCGGCGGCCAAGCCGGTG
GCAGCGGGTACGGAGATCCTTACGGCGGTCCGTCCAGTTCCCCGGCACCGGCATCGGGTGGAATCGACGACGACGAGATT
CCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.337

100

0.593
  ssb Neisseria gonorrhoeae MS11

41.341

100

0.457
  ssb Neisseria meningitidis MC58

41.341

100

0.457
  ssb Vibrio cholerae strain A1552

62.712

72.84

0.457

Multiple sequence alignment