Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIU94_RS14590 Genome accession   NZ_CP045372
Coordinates   2979774..2980283 (+) Length   169 a.a.
NCBI ID   WP_152466474.1    Uniprot ID   A0A5P9FAG1
Organism   Sulfitobacter sp. THAF37     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2974774..2985283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU94_RS14575 (FIU94_14700) - 2976083..2978173 (+) 2091 WP_152466472.1 ABC transporter ATP-binding protein -
  FIU94_RS14580 (FIU94_14705) - 2978287..2978931 (-) 645 WP_254702552.1 hypothetical protein -
  FIU94_RS14585 (FIU94_14710) - 2978973..2979569 (-) 597 WP_152466473.1 lytic transglycosylase domain-containing protein -
  FIU94_RS14590 (FIU94_14715) ssb 2979774..2980283 (+) 510 WP_152466474.1 single-stranded DNA-binding protein Machinery gene
  FIU94_RS14595 (FIU94_14720) aroB 2980541..2981653 (-) 1113 WP_152466475.1 3-dehydroquinate synthase -
  FIU94_RS14600 (FIU94_14725) - 2981646..2982242 (-) 597 WP_152466476.1 shikimate kinase -
  FIU94_RS14605 (FIU94_14735) - 2982465..2984057 (+) 1593 WP_368407132.1 hypothetical protein -
  FIU94_RS14610 (FIU94_14740) - 2984063..2985037 (+) 975 WP_152466477.1 site-specific tyrosine recombinase XerD -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 17841.36 Da        Isoelectric Point: 5.0099

>NTDB_id=393725 FIU94_RS14590 WP_152466474.1 2979774..2980283(+) (ssb) [Sulfitobacter sp. THAF37]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFQEGLVRVAEQYLKKGSKVYI
EGQLQTRKWQDQSGQDRYSTEVVLQGYGGTLTMLDGRDGGGSGGGYGGGSSSGGDYGGGYEGGNYDSGPSSGGGGGGGSS
RDLDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=393725 FIU94_RS14590 WP_152466474.1 2979774..2980283(+) (ssb) [Sulfitobacter sp. THAF37]
ATGGCCGGCTCAGTGAACAAAGTGATCCTTATCGGCAATCTGGGGCGCGATCCCGAGGTGCGGTCGTTCCAGAACGGCGG
CAAGGTCTGCAACCTGCGGATCGCCACGTCGGAAACCTGGAAGGACCGCAATACCGGCGAGCGCCGCGAAAAGACCGAAT
GGCATTCGGTGGCCATCTTTCAGGAAGGTTTGGTGCGCGTCGCTGAGCAATACCTGAAAAAAGGGTCAAAGGTGTATATC
GAAGGCCAGTTGCAGACGCGCAAGTGGCAGGACCAGTCGGGTCAGGACCGCTATTCCACCGAAGTTGTCCTGCAAGGTTA
CGGCGGCACGCTGACCATGCTGGACGGCCGCGACGGCGGCGGATCGGGCGGCGGCTACGGCGGCGGGTCCTCCTCCGGCG
GGGATTACGGCGGCGGTTACGAGGGCGGCAACTACGACAGCGGCCCATCGTCGGGCGGCGGCGGTGGCGGCGGCTCATCG
CGCGACCTGGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9FAG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.757

100

0.55
  ssb Glaesserella parasuis strain SC1401

46.774

100

0.515
  ssb Neisseria gonorrhoeae MS11

39.665

100

0.42
  ssb Neisseria meningitidis MC58

39.665

100

0.42

Multiple sequence alignment