Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIU95_RS02535 Genome accession   NZ_CP045369
Coordinates   574465..575055 (+) Length   196 a.a.
NCBI ID   WP_152451193.1    Uniprot ID   A0A5P9ESF5
Organism   Microbulbifer sp. THAF38     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 569465..580055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU95_RS02525 (FIU95_02555) - 571624..573030 (+) 1407 WP_152451189.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  FIU95_RS02530 (FIU95_02560) - 573121..574302 (+) 1182 WP_152451191.1 MFS transporter -
  FIU95_RS02535 (FIU95_02565) ssb 574465..575055 (+) 591 WP_152451193.1 single-stranded DNA-binding protein Machinery gene
  FIU95_RS02540 (FIU95_02570) - 575070..575921 (+) 852 WP_152451195.1 sugar nucleotide-binding protein -
  FIU95_RS02545 (FIU95_02575) fabB 575991..577214 (-) 1224 WP_152451197.1 beta-ketoacyl-ACP synthase I -
  FIU95_RS02550 (FIU95_02580) fabA 577281..577805 (-) 525 WP_152451199.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -
  FIU95_RS02555 (FIU95_02585) galU 578079..578927 (+) 849 WP_152451201.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20968.97 Da        Isoelectric Point: 5.7866

>NTDB_id=393699 FIU95_RS02535 WP_152451193.1 574465..575055(+) (ssb) [Microbulbifer sp. THAF38]
MARGINKVILIGNLGNDPETKYMPSGGAVTNVSLATSESWKDKQTGQQQERTEWHRVVFFNRLAEIAGEYLRKGSKVYVE
GSLRTRKWQDKSSGQDRYTTEIVASEMQMLDGRGEQGGFGQGMGGAAMGAAGMGGQMGGHQGGQGGYEQQGGFQQGGYQQ
GNQGRPAPGNQQQPAQQPSQGPAGGFDNSFDDDIPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=393699 FIU95_RS02535 WP_152451193.1 574465..575055(+) (ssb) [Microbulbifer sp. THAF38]
ATGGCCAGGGGTATCAACAAAGTAATTTTAATCGGCAACCTGGGTAACGACCCGGAGACCAAATATATGCCGAGCGGCGG
TGCGGTGACCAACGTCAGCCTGGCCACCAGTGAGAGCTGGAAGGACAAGCAGACCGGTCAGCAACAGGAGCGCACCGAAT
GGCACCGTGTAGTATTTTTTAATCGCCTGGCTGAGATCGCCGGCGAGTACTTGCGCAAGGGCTCCAAGGTCTATGTTGAG
GGCTCACTGCGCACGCGCAAGTGGCAGGATAAGAGTAGTGGTCAGGATCGCTACACTACCGAGATTGTTGCCAGTGAGAT
GCAAATGCTCGATGGTCGAGGAGAGCAGGGTGGCTTCGGCCAGGGCATGGGCGGTGCCGCAATGGGTGCAGCCGGAATGG
GCGGCCAGATGGGTGGTCATCAGGGCGGCCAGGGTGGTTACGAACAGCAGGGCGGCTTCCAACAAGGTGGCTACCAGCAG
GGTAATCAGGGACGCCCAGCGCCCGGTAACCAACAGCAGCCCGCACAGCAACCAAGCCAGGGCCCTGCCGGTGGTTTCGA
TAACAGCTTCGACGACGATATTCCCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9ESF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.22

100

0.536
  ssb Glaesserella parasuis strain SC1401

53.368

98.469

0.526
  ssb Neisseria gonorrhoeae MS11

43.939

100

0.444
  ssb Neisseria meningitidis MC58

43.655

100

0.439

Multiple sequence alignment