Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIU98_RS20995 Genome accession   NZ_CP045359
Coordinates   4502964..4503455 (-) Length   163 a.a.
NCBI ID   WP_037055750.1    Uniprot ID   A0A5P9CCU7
Organism   Pseudomonas sp. THAF42     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4497964..4508455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU98_RS20970 (FIU98_20875) - 4498084..4499433 (-) 1350 WP_152489701.1 MotA/TolQ/ExbB proton channel family protein -
  FIU98_RS20975 (FIU98_20880) - 4499430..4500203 (-) 774 WP_047584896.1 DUF3450 domain-containing protein -
  FIU98_RS20980 (FIU98_20885) - 4500397..4501089 (+) 693 WP_037055756.1 OmpW family protein -
  FIU98_RS20985 (FIU98_20890) - 4501144..4502067 (-) 924 WP_037055754.1 NAD-dependent epimerase/dehydratase family protein -
  FIU98_RS20990 (FIU98_20895) - 4502060..4502944 (-) 885 WP_134675805.1 sugar nucleotide-binding protein -
  FIU98_RS20995 (FIU98_20900) ssb 4502964..4503455 (-) 492 WP_037055750.1 single-stranded DNA-binding protein Machinery gene
  FIU98_RS21000 (FIU98_20905) - 4503465..4504859 (-) 1395 WP_152489702.1 MFS transporter -
  FIU98_RS21005 (FIU98_20910) uvrA 4504994..4507855 (+) 2862 WP_152489703.1 excinuclease ABC subunit UvrA -
  FIU98_RS21010 (FIU98_20915) bfr 4507943..4508407 (-) 465 WP_047587342.1 bacterioferritin -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18186.27 Da        Isoelectric Point: 5.3335

>NTDB_id=393650 FIU98_RS20995 WP_037055750.1 4502964..4503455(-) (ssb) [Pseudomonas sp. THAF42]
MARGVNKVILVGTCGQDPETRYLPSGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVALFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPSGDDSGAPRQSRPAPQREPQQAPRQERPAPQQAQPAPDYDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=393650 FIU98_RS20995 WP_037055750.1 4502964..4503455(-) (ssb) [Pseudomonas sp. THAF42]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGCGGCCAGGACCCGGAAACACGCTACCTGCCCAGCGGCAA
TGCGGTCACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGCGTTGCCCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTGTACATCGAG
GGCAAGCTGCAGACCCGCGAGTGGGAAAAGGACGGTATCAAGCGTTACACCACCGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGAGCGGTGACGACAGCGGCGCACCGCGCCAGTCGCGTCCGGCACCTCAGCGTGAGC
CGCAGCAGGCCCCGCGTCAGGAGCGTCCGGCTCCGCAGCAGGCCCAGCCGGCGCCTGACTACGACAGCTTCGACGACGAT
ATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9CCU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.742

100

0.62
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.54
  ssb Neisseria meningitidis MC58

47.458

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.515

Multiple sequence alignment