Detailed information NTG0393632

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FIU98_RS04015
• Genome accession: NZ_CP045359
• Coordinates: 876350..877219 (-)
• Length: 289 a.a.
• NCBI ID: WP_152487864.1
• Uniprot ID: -
• Organism: Pseudomonas sp. THAF42
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 871350..882219

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIU98_RS03975 (FIU98_03925)	-	871460..872761 (-)	1302	WP_037046213.1	NAD(P)/FAD-dependent oxidoreductase	-
FIU98_RS03980 (FIU98_03930)	-	872825..872998 (-)	174	WP_047592478.1	DUF3094 domain-containing protein	-
FIU98_RS03985 (FIU98_03935)	-	873023..873571 (-)	549	WP_037046217.1	MOSC domain-containing protein	-
FIU98_RS03990 (FIU98_03940)	-	873568..874197 (-)	630	WP_037046220.1	DUF1780 domain-containing protein	-
FIU98_RS03995 (FIU98_03945)	-	874317..875006 (+)	690	WP_037046222.1	energy-coupling factor ABC transporter permease	-
FIU98_RS04000 (FIU98_03950)	-	875111..875326 (+)	216	WP_152487862.1	hypothetical protein	-
FIU98_RS04005 (FIU98_03955)	yacG	875381..875575 (-)	195	WP_037046227.1	DNA gyrase inhibitor YacG	-
FIU98_RS04010 (FIU98_03960)	coaE	875572..876180 (-)	609	WP_152487863.1	dephospho-CoA kinase	-
FIU98_RS04015 (FIU98_03965)	pilD	876350..877219 (-)	870	WP_152487864.1	A24 family peptidase	Machinery gene
FIU98_RS04020 (FIU98_03970)	pilC	877223..878440 (-)	1218	WP_152487865.1	type II secretion system F family protein	Machinery gene
FIU98_RS04025 (FIU98_03975)	pilB	878443..880146 (-)	1704	WP_152487866.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FIU98_RS25085 (FIU98_03980)	pilA	880368..880781 (+)	414	WP_152487867.1	pilin	Machinery gene
FIU98_RS04035 (FIU98_03985)	pilA	880885..881301 (+)	417	WP_152487868.1	pilin	Machinery gene

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31700.76 Da
• Isoelectric Point: 6.8274

>NTDB_id=393632 FIU98_RS04015 WP_152487864.1 876350..877219(-) (pilD) [Pseudomonas sp. THAF42]
MPLLDFLASHVLAFVLCAVLLGLLVGSFLNVVIYRLPKMLQRDWQAQAREVLEMPPAPPAETFNLVLPNSSCPGCGHEIR
PWENVPVISYLFLRGKCSNCKTPISKRYPLVELACGVLSGYIAWHFGFTWQAGAMLALTWGLLAMSLIDADHQILPDILV
LPLLWLGLIVNGFGLFTNLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVILLRMRGSDSSTPMPFGPYLAIAGWIALLWGDVITGSYLKFAGF

Nucleotide

• Length: 870 bp

>NTDB_id=393632 FIU98_RS04015 WP_152487864.1 876350..877219(-) (pilD) [Pseudomonas sp. THAF42]
ATGCCCTTACTCGACTTTCTGGCCAGCCATGTGCTGGCCTTTGTTTTGTGTGCAGTCCTACTTGGTTTGCTGGTAGGCAG
CTTCCTCAACGTCGTAATCTACCGCCTGCCGAAGATGCTTCAACGCGATTGGCAAGCCCAGGCGCGCGAGGTGCTGGAGA
TGCCGCCGGCACCTCCAGCAGAGACGTTCAATCTGGTGCTGCCGAACTCCAGCTGTCCTGGTTGTGGGCATGAAATTCGC
CCCTGGGAGAACGTGCCGGTCATCAGCTACCTGTTCCTGCGTGGCAAATGCTCGAACTGCAAGACGCCCATCAGCAAGCG
CTACCCCCTGGTGGAACTGGCCTGCGGCGTGCTGTCCGGCTATATCGCCTGGCACTTCGGCTTCACCTGGCAGGCCGGCG
CCATGCTGGCGCTGACCTGGGGCCTGTTGGCGATGAGCCTGATCGACGCCGACCACCAGATCCTGCCGGACATTCTGGTA
TTGCCGCTGCTGTGGCTGGGCCTGATCGTCAACGGCTTCGGCCTGTTCACCAACCTGGAAGACGCACTCTGGGGCGCCAT
TGCCGGCTACCTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGATCACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTCCTGGCGATGCTTGGCGCCTGGGGTGGCTGGCAGATTCTACCGCTGACCATCCTCCTGTCTTCGCTGGTTGGC
GCGGTGCTTGGCGTGATCCTGCTGCGCATGCGCGGCAGCGACTCCAGCACGCCGATGCCCTTCGGGCCCTATCTGGCCAT
TGCCGGCTGGATCGCGCTGCTGTGGGGCGATGTGATTACCGGCAGCTACCTGAAGTTCGCCGGTTTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.109	94.81	0.522
pilD	Vibrio campbellii strain DS40M4	54.745	94.81	0.519
pilD	Acinetobacter baumannii D1279779	50.883	97.924	0.498
pilD	Acinetobacter nosocomialis M2	50.177	97.924	0.491
pilD	Neisseria gonorrhoeae MS11	50.57	91.003	0.46