Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIV00_RS16895 Genome accession   NZ_CP045354
Coordinates   3657788..3658318 (-) Length   176 a.a.
NCBI ID   WP_152501840.1    Uniprot ID   -
Organism   Labrenzia sp. THAF82     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3652788..3663318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV00_RS16880 (FIV00_17335) - 3653474..3654733 (+) 1260 WP_152501837.1 zinc ABC transporter substrate-binding protein -
  FIV00_RS16885 (FIV00_17340) - 3654819..3656816 (-) 1998 WP_152501838.1 murein L,D-transpeptidase -
  FIV00_RS16890 (FIV00_17345) - 3657254..3657730 (+) 477 WP_152501839.1 hypothetical protein -
  FIV00_RS16895 (FIV00_17350) ssb 3657788..3658318 (-) 531 WP_152501840.1 single-stranded DNA-binding protein Machinery gene
  FIV00_RS16900 - 3658626..3658895 (+) 270 WP_152501841.1 hypothetical protein -
  FIV00_RS16905 (FIV00_17360) uvrA 3658892..3661822 (+) 2931 WP_152501842.1 excinuclease ABC subunit UvrA -
  FIV00_RS16910 (FIV00_17365) - 3662069..3662218 (+) 150 WP_152501843.1 DUF1127 domain-containing protein -
  FIV00_RS16915 (FIV00_17370) - 3662629..3662778 (+) 150 WP_152501844.1 DUF1127 domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18469.18 Da        Isoelectric Point: 5.2955

>NTDB_id=393591 FIV00_RS16895 WP_152501840.1 3657788..3658318(-) (ssb) [Labrenzia sp. THAF82]
MAGSVNKVILVGNLGADPEIRRTQDGRPIANLRIATSESWRDRNSGERREKTEWHRVVIFNEGLCKVAEQYLRKGSKIYL
EGQLQTRKWQDQSGQDRYSTEVVLQGFNSNLTMLDGRGEGGGQPGGLPDYGNDQGGGFGGGSGSGGGYGGGQSGGGFGGP
SSGGGGAGPMDDEIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=393591 FIV00_RS16895 WP_152501840.1 3657788..3658318(-) (ssb) [Labrenzia sp. THAF82]
ATGGCGGGCAGCGTCAATAAGGTAATTTTGGTTGGAAATCTGGGGGCAGACCCGGAAATCCGTCGGACTCAGGACGGTCG
GCCGATTGCCAATCTGCGGATCGCGACGTCGGAATCCTGGAGAGACCGCAACAGCGGTGAGCGTCGGGAAAAAACCGAAT
GGCACCGGGTTGTCATCTTCAACGAAGGTCTGTGCAAGGTGGCTGAGCAATATCTGCGCAAAGGATCCAAGATCTATCTT
GAAGGTCAATTGCAGACCCGCAAGTGGCAGGATCAGTCAGGTCAGGACCGCTATTCGACCGAAGTTGTGCTGCAAGGTTT
CAACTCCAACCTTACTATGCTCGATGGGCGCGGTGAGGGCGGTGGCCAACCAGGTGGATTGCCAGACTACGGAAACGACC
AGGGCGGCGGTTTCGGCGGAGGCTCCGGTAGTGGCGGAGGCTATGGCGGTGGCCAGAGCGGCGGCGGTTTCGGAGGTCCT
TCGAGCGGTGGCGGTGGTGCCGGCCCGATGGACGATGAGATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.849

100

0.506
  ssb Vibrio cholerae strain A1552

64.463

68.75

0.443
  ssb Neisseria gonorrhoeae MS11

36.264

100

0.375
  ssb Neisseria meningitidis MC58

35.754

100

0.364

Multiple sequence alignment