Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   FIV01_RS08910 Genome accession   NZ_CP045350
Coordinates   1909101..1909688 (-) Length   195 a.a.
NCBI ID   WP_152430689.1    Uniprot ID   -
Organism   Vibrio aquimaris strain THAF100     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1904101..1914688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV01_RS08895 (FIV01_08990) serC 1905585..1906667 (-) 1083 WP_152430686.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  FIV01_RS08900 (FIV01_08995) - 1906799..1908061 (-) 1263 WP_152430687.1 DUF945 family protein -
  FIV01_RS08905 (FIV01_09000) - 1908499..1909053 (+) 555 WP_152430688.1 hypothetical protein -
  FIV01_RS08910 (FIV01_09005) tfoX 1909101..1909688 (-) 588 WP_152430689.1 TfoX/Sxy family DNA transformation protein Regulator
  FIV01_RS08915 (FIV01_09010) - 1910034..1910954 (+) 921 WP_152430690.1 HDOD domain-containing protein -
  FIV01_RS08920 (FIV01_09015) - 1910983..1911897 (+) 915 WP_152430691.1 lysine exporter LysO family protein -
  FIV01_RS08925 (FIV01_09020) - 1912003..1912518 (+) 516 WP_152430692.1 hypothetical protein -
  FIV01_RS08930 (FIV01_09025) panP 1912659..1914305 (+) 1647 WP_152430693.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22249.89 Da        Isoelectric Point: 10.7658

>NTDB_id=393569 FIV01_RS08910 WP_152430689.1 1909101..1909688(-) (tfoX) [Vibrio aquimaris strain THAF100]
MDMTEQNFISYVNKFGSFQKRSMFGGLGLFKQGAMFALISSGQVFIRGGEQLDRQLMQLGCTKYRHVKKQTTATVNYYDV
TRLFLSRSAKLDDIVRQSMQFSVSQRHHKKSSASRRLRDLPNMQLTLERMVKKSGIGDVDTFVELGAPKVFSKVKATYGN
DVDVKLLWKFAGAIDGVHWKLIQEPRKRQLLASCI

Nucleotide


Download         Length: 588 bp        

>NTDB_id=393569 FIV01_RS08910 WP_152430689.1 1909101..1909688(-) (tfoX) [Vibrio aquimaris strain THAF100]
ATGGATATGACAGAGCAAAACTTTATCTCGTATGTAAATAAGTTCGGGAGTTTCCAAAAGCGTTCAATGTTTGGTGGGCT
GGGCCTCTTTAAACAAGGTGCCATGTTTGCCTTGATTAGTTCTGGGCAAGTGTTTATTCGGGGGGGAGAACAACTCGATA
GGCAATTGATGCAGTTGGGGTGTACCAAATACCGTCACGTAAAAAAACAGACGACAGCAACGGTGAACTATTATGATGTA
ACGCGCCTTTTTCTTTCGAGAAGCGCAAAGCTTGACGATATTGTGCGGCAATCAATGCAATTTTCTGTTTCTCAGCGACA
TCATAAAAAATCATCCGCCAGTCGTCGTTTACGTGACTTGCCAAATATGCAACTAACGCTTGAGCGTATGGTAAAAAAAT
CCGGTATTGGCGATGTAGATACGTTTGTTGAGCTTGGTGCTCCTAAAGTGTTCTCAAAGGTGAAAGCCACATATGGCAAT
GATGTTGATGTGAAGCTACTTTGGAAGTTTGCCGGTGCAATAGATGGCGTACACTGGAAGTTGATTCAAGAACCGCGTAA
GCGTCAATTGCTCGCAAGTTGCATTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(114-192)

TfoX N-terminal domain (TfoX_N)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

68.75

98.462

0.677
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

68.75

98.462

0.677
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

68.75

98.462

0.677
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

68.75

98.462

0.677
  tfoX Vibrio cholerae strain A1552

68.75

98.462

0.677
  tfoX Vibrio campbellii strain DS40M4

68.041

99.487

0.677
  tfoX Vibrio parahaemolyticus RIMD 2210633

68.041

99.487

0.677
  tfoX Aliivibrio fischeri ES114

58.639

97.949

0.574

Multiple sequence alignment