Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   FIV04_RS13665 Genome accession   NZ_CP045338
Coordinates   3012708..3013307 (-) Length   199 a.a.
NCBI ID   WP_152469385.1    Uniprot ID   A0A5P9BCI5
Organism   Vibrio sp. THAF190c     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3007708..3018307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV04_RS13640 (FIV04_13695) aroB 3008053..3009141 (-) 1089 WP_032550007.1 3-dehydroquinate synthase -
  FIV04_RS13645 (FIV04_13700) aroK 3009167..3009685 (-) 519 WP_032550005.1 shikimate kinase AroK -
  FIV04_RS13650 (FIV04_13705) - 3009860..3011497 (-) 1638 Protein_2598 type IV pilus secretin PilQ -
  FIV04_RS13655 (FIV04_13710) pilP 3011617..3012135 (-) 519 WP_152469383.1 pilus assembly protein PilP Machinery gene
  FIV04_RS13660 (FIV04_13715) pilO 3012122..3012715 (-) 594 WP_152469384.1 type 4a pilus biogenesis protein PilO Machinery gene
  FIV04_RS13665 (FIV04_13720) pilN 3012708..3013307 (-) 600 WP_152469385.1 PilN domain-containing protein Machinery gene
  FIV04_RS13670 (FIV04_13725) pilM 3013291..3014316 (-) 1026 WP_152469386.1 type IV pilus assembly protein PilM Machinery gene
  FIV04_RS13675 (FIV04_13730) - 3014464..3017022 (+) 2559 WP_172974250.1 penicillin-binding protein 1A -
  FIV04_RS13680 (FIV04_13735) oxyR 3017107..3017994 (-) 888 WP_152469387.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 23087.61 Da        Isoelectric Point: 10.2663

>NTDB_id=393506 FIV04_RS13665 WP_152469385.1 3012708..3013307(-) (pilN) [Vibrio sp. THAF190c]
MLHQINLLPWRDELRAQHKKRFIQLVILGSLVALMGQWAIGHYFQQEKARQQARLTYLEQYIGQLDEQIRSLKVAEREHK
AILTRLDVVESLQSGRNKTTYFMNLMPELIPEGVYVDKIKMNGQEIEMSGISDSTARLATMLDNLERSASLSNVEMHSIV
HNRKRFNKEFQTFKVSFSFVSPSIKQTRIRSKAQEASHG

Nucleotide


Download         Length: 600 bp        

>NTDB_id=393506 FIV04_RS13665 WP_152469385.1 3012708..3013307(-) (pilN) [Vibrio sp. THAF190c]
ATGTTGCATCAAATTAACCTCCTTCCTTGGCGCGATGAGCTAAGAGCACAGCACAAGAAACGCTTCATTCAATTGGTGAT
CTTAGGCTCTTTAGTTGCGCTTATGGGGCAGTGGGCTATCGGGCATTACTTCCAACAAGAGAAAGCACGTCAGCAAGCAC
GCCTTACCTATCTTGAGCAATATATTGGCCAGCTTGATGAACAGATTCGCTCTTTGAAAGTGGCGGAGCGTGAGCACAAA
GCCATTTTAACTCGCCTAGATGTCGTTGAGTCACTTCAGTCTGGTCGCAATAAAACCACGTACTTTATGAATCTGATGCC
CGAATTGATTCCTGAAGGGGTGTACGTCGATAAGATCAAGATGAATGGGCAAGAGATAGAGATGTCGGGTATCAGTGACA
GCACAGCACGGCTCGCCACTATGCTCGATAACCTAGAACGTTCCGCCTCCCTCAGCAATGTTGAAATGCACTCAATTGTG
CACAATCGCAAGCGCTTTAATAAAGAATTTCAAACCTTTAAGGTCTCATTTAGCTTTGTCTCGCCCTCTATAAAACAAAC
GCGAATACGAAGCAAAGCTCAAGAGGCGTCGCATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9BCI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

64.865

92.965

0.603
  pilN Vibrio cholerae strain A1552

64.481

91.96

0.593

Multiple sequence alignment