Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   FIV04_RS13655 Genome accession   NZ_CP045338
Coordinates   3011617..3012135 (-) Length   172 a.a.
NCBI ID   WP_152469383.1    Uniprot ID   A0A5P9BBC5
Organism   Vibrio sp. THAF190c     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3006617..3017135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV04_RS13640 (FIV04_13695) aroB 3008053..3009141 (-) 1089 WP_032550007.1 3-dehydroquinate synthase -
  FIV04_RS13645 (FIV04_13700) aroK 3009167..3009685 (-) 519 WP_032550005.1 shikimate kinase AroK -
  FIV04_RS13650 (FIV04_13705) - 3009860..3011497 (-) 1638 Protein_2598 type IV pilus secretin PilQ -
  FIV04_RS13655 (FIV04_13710) pilP 3011617..3012135 (-) 519 WP_152469383.1 pilus assembly protein PilP Machinery gene
  FIV04_RS13660 (FIV04_13715) pilO 3012122..3012715 (-) 594 WP_152469384.1 type 4a pilus biogenesis protein PilO Machinery gene
  FIV04_RS13665 (FIV04_13720) pilN 3012708..3013307 (-) 600 WP_152469385.1 PilN domain-containing protein Machinery gene
  FIV04_RS13670 (FIV04_13725) pilM 3013291..3014316 (-) 1026 WP_152469386.1 type IV pilus assembly protein PilM Machinery gene
  FIV04_RS13675 (FIV04_13730) - 3014464..3017022 (+) 2559 WP_172974250.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19278.48 Da        Isoelectric Point: 10.7230

>NTDB_id=393504 FIV04_RS13655 WP_152469383.1 3011617..3012135(-) (pilP) [Vibrio sp. THAF190c]
MSLVRSLLVLLIVSTVVGCKANQDSLEEFVVQVEARARKDVEQLSPTSEFIAAQYQQRTHRPPFELPKEALVLTQPKAKK
DCWQPTRRSRTGKLEKYPLEQLRLKGVMGSGSQISGLVQTPKGNVVKVQKGQFIGLNSGRITKVTSQYVLINETLPDGLG
CWHRRNVRLALK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=393504 FIV04_RS13655 WP_152469383.1 3011617..3012135(-) (pilP) [Vibrio sp. THAF190c]
ATGAGTCTCGTTAGATCGCTGCTGGTGCTGTTGATTGTTTCTACCGTCGTCGGGTGTAAGGCAAACCAAGACTCTCTAGA
GGAGTTTGTTGTCCAGGTAGAGGCAAGAGCACGCAAAGATGTCGAGCAGCTAAGTCCTACTTCTGAGTTCATTGCCGCGC
AATATCAGCAAAGGACGCATCGTCCACCATTTGAACTGCCCAAAGAGGCGCTGGTACTGACTCAGCCCAAAGCGAAAAAA
GATTGTTGGCAGCCAACTCGACGCAGTCGTACGGGCAAGTTAGAAAAGTATCCGCTAGAGCAGTTGCGGCTCAAGGGAGT
CATGGGCAGCGGCAGTCAAATCTCTGGTCTTGTTCAAACTCCCAAAGGAAACGTCGTTAAGGTCCAGAAAGGCCAATTCA
TCGGCTTGAACAGTGGGCGCATTACCAAAGTCACCAGTCAGTACGTATTGATTAATGAAACCCTTCCAGATGGTCTAGGT
TGTTGGCATCGACGCAATGTCCGCTTAGCTCTCAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9BBC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio cholerae strain A1552

62.424

95.93

0.599
  pilP Vibrio campbellii strain DS40M4

57.143

97.674

0.558

Multiple sequence alignment