Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   HPT10_RS27440 Genome accession   NZ_CP053705
Coordinates   5935386..5935910 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PAC6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5930386..5940910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPT10_RS27425 (HPT10_27450) aroB 5931502..5932608 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  HPT10_RS27430 (HPT10_27455) aroK 5932658..5933176 (-) 519 WP_003095833.1 shikimate kinase AroK -
  HPT10_RS27435 (HPT10_27460) pilQ 5933188..5935332 (-) 2145 WP_023087871.1 type 4a pilus secretin PilQ Machinery gene
  HPT10_RS27440 (HPT10_27465) comL/pilP 5935386..5935910 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HPT10_RS27445 (HPT10_27470) pilO 5935907..5936530 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  HPT10_RS27450 (HPT10_27475) pilN 5936527..5937123 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  HPT10_RS27455 (HPT10_27480) pilM 5937123..5938187 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HPT10_RS27460 (HPT10_27485) - 5938372..5940842 (+) 2471 Protein_5445 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=393488 HPT10_RS27440 WP_003095836.1 5935386..5935910(-) (comL/pilP) [Pseudomonas aeruginosa strain PAC6]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=393488 HPT10_RS27440 WP_003095836.1 5935386..5935910(-) (comL/pilP) [Pseudomonas aeruginosa strain PAC6]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362