Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   FIV04_RS08830 Genome accession   NZ_CP045338
Coordinates   1994948..1995529 (-) Length   193 a.a.
NCBI ID   WP_150868835.1    Uniprot ID   -
Organism   Vibrio sp. THAF190c     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1989948..2000529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV04_RS08810 (FIV04_08865) - 1990216..1991478 (-) 1263 WP_152468912.1 DUF945 family protein -
  FIV04_RS08815 (FIV04_08870) - 1991664..1993607 (+) 1944 WP_152468913.1 ATP-binding protein -
  FIV04_RS08820 (FIV04_08875) - 1993600..1994097 (+) 498 WP_032548719.1 response regulator -
  FIV04_RS08825 (FIV04_08880) - 1994285..1994827 (+) 543 WP_032548717.1 hypothetical protein -
  FIV04_RS08830 (FIV04_08885) tfoX 1994948..1995529 (-) 582 WP_150868835.1 TfoX/Sxy family DNA transformation protein Regulator
  FIV04_RS08835 (FIV04_08890) - 1995894..1996814 (+) 921 WP_150868836.1 HDOD domain-containing protein -
  FIV04_RS08840 (FIV04_08895) - 1996849..1997754 (+) 906 WP_152468914.1 lysine exporter LysO family protein -
  FIV04_RS08845 (FIV04_08900) - 1997962..1998489 (+) 528 WP_032548712.1 hypothetical protein -
  FIV04_RS08850 (FIV04_08905) panP 1998623..2000266 (+) 1644 WP_152468915.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22145.43 Da        Isoelectric Point: 8.4781

>NTDB_id=393487 FIV04_RS08830 WP_150868835.1 1994948..1995529(-) (tfoX) [Vibrio sp. THAF190c]
MTETAFINYVSKFGEHQKRSMFGGTGLFQSDAMFALISEGCLFIRGGESLDEKLTDLDCEKYRHVKKQTTATVNYYDITD
LFTCEHPELDSIIRTSIDNSVQQRSFKKSTASRRLRDLPNMQLTLERMVKKAGVEDVSMFMQLGASEVFSKVRKTYGNDV
DLKLLWKFAGAIDGIHWKLLQEPRKQQLLKSCH

Nucleotide


Download         Length: 582 bp        

>NTDB_id=393487 FIV04_RS08830 WP_150868835.1 1994948..1995529(-) (tfoX) [Vibrio sp. THAF190c]
ATGACCGAGACAGCATTTATTAATTACGTAAGTAAGTTTGGTGAGCACCAAAAACGTTCAATGTTTGGAGGTACGGGCCT
CTTTCAGAGCGATGCGATGTTTGCATTGATTAGCGAAGGTTGTTTATTTATTCGCGGTGGCGAGTCGTTAGATGAAAAAT
TGACGGATCTAGACTGTGAAAAATATCGCCACGTCAAAAAGCAGACAACAGCCACTGTAAATTACTACGATATTACCGAT
CTGTTTACGTGTGAGCACCCTGAGCTGGATAGCATTATTCGAACTTCTATCGATAATTCAGTTCAACAACGTAGTTTCAA
GAAATCGACTGCTAGCCGCCGTTTGCGCGACCTACCTAACATGCAACTCACGTTAGAGCGTATGGTTAAAAAGGCGGGCG
TTGAAGACGTCTCTATGTTCATGCAGTTAGGCGCATCTGAAGTTTTCAGTAAGGTTCGTAAAACTTACGGCAACGATGTA
GACCTAAAGCTACTTTGGAAATTTGCTGGTGCAATTGATGGTATTCACTGGAAACTGCTTCAAGAACCTCGCAAACAACA
GCTATTGAAGAGCTGCCACTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

73.057

100

0.731
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

73.057

100

0.731
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

73.057

100

0.731
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

73.057

100

0.731
  tfoX Vibrio cholerae strain A1552

73.057

100

0.731
  tfoX Vibrio campbellii strain DS40M4

67.876

100

0.679
  tfoX Vibrio parahaemolyticus RIMD 2210633

67.876

100

0.679
  tfoX Aliivibrio fischeri ES114

58.947

98.446

0.58

Multiple sequence alignment