Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   FIV04_RS12180 Genome accession   NZ_CP045338
Coordinates   2744441..2745046 (+) Length   201 a.a.
NCBI ID   WP_032551493.1    Uniprot ID   A0A066UV09
Organism   Vibrio sp. THAF190c     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2739441..2750046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV04_RS12160 (FIV04_12215) - 2739770..2740687 (-) 918 WP_152469272.1 ABC transporter ATP-binding protein -
  FIV04_RS12165 (FIV04_12220) - 2740916..2742586 (-) 1671 WP_032551496.1 SulP family inorganic anion transporter -
  FIV04_RS12170 (FIV04_12225) can 2742830..2743498 (+) 669 WP_150893490.1 carbonate dehydratase -
  FIV04_RS12175 (FIV04_12230) hpt 2743573..2744103 (-) 531 WP_150869255.1 hypoxanthine phosphoribosyltransferase -
  FIV04_RS12180 (FIV04_12235) opaR 2744441..2745046 (+) 606 WP_032551493.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  FIV04_RS12185 (FIV04_12240) lpdA 2745525..2746955 (-) 1431 WP_032550144.1 dihydrolipoyl dehydrogenase -
  FIV04_RS12190 (FIV04_12245) aceF 2747196..2749109 (-) 1914 WP_152469273.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23295.60 Da        Isoelectric Point: 6.4903

>NTDB_id=393491 FIV04_RS12180 WP_032551493.1 2744441..2745046(+) (opaR) [Vibrio sp. THAF190c]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHAKQNLTNITNEMVALVEQDCHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFVKAIERGEVCDQHEPK
HLANLFHGICYSLFIQAKRANSTEELHSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=393491 FIV04_RS12180 WP_032551493.1 2744441..2745046(+) (opaR) [Vibrio sp. THAF190c]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCCCTAAAAAGAAAACTTCAATTGATGGAGATTGCTCTTGA
AGTATTCTCTCGTCGCGGCATTGGCCGAGGCGGACACGCAGATATCGCTGACATTGCTCAAGTGTCTGTCGCTACTGTAT
TTAACTACTTCCCAACACGTGAAGATCTGGTCGATGAGGTTCTAAACCACGTTGTTCGTCAGTTCTCGAACTTCCTTTCA
GACAATATCGATCTTGATCTGCATGCGAAGCAGAACCTGACCAACATCACCAATGAGATGGTTGCACTTGTTGAACAAGA
TTGCCACTGGCTTAATGTTTGGTTCGAATGGAGTGCATCGACTCGTGACGAAGTATGGCCACTGTTCGTAACAACCAACC
GCACTAACCAAATGCTGGTTCAGAACATGTTCGTTAAAGCGATCGAGCGCGGCGAAGTATGTGACCAACATGAACCGAAA
CACTTGGCGAACCTATTCCACGGTATCTGCTACTCGCTGTTCATCCAAGCGAAGCGTGCAAATTCAACTGAAGAATTGCA
CTCACTGACTGACAGCTACTTAAATATGTTGTGTATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066UV09

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

83.5

99.502

0.831
  hapR Vibrio cholerae C6706

73.869

99.005

0.731
  hapR Vibrio cholerae strain A1552

73.869

99.005

0.731

Multiple sequence alignment