Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FIV05_RS20900 Genome accession   NZ_CP045333
Coordinates   4533668..4534219 (-) Length   183 a.a.
NCBI ID   WP_152510839.1    Uniprot ID   -
Organism   Labrenzia sp. THAF191a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4528668..4539219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV05_RS20885 (FIV05_21190) - 4529484..4530629 (+) 1146 WP_152510836.1 zinc ABC transporter substrate-binding protein -
  FIV05_RS20890 (FIV05_21195) - 4530710..4532599 (-) 1890 WP_209009731.1 L,D-transpeptidase family protein -
  FIV05_RS20895 (FIV05_21200) - 4533130..4533606 (+) 477 WP_152510838.1 hypothetical protein -
  FIV05_RS20900 (FIV05_21205) ssb 4533668..4534219 (-) 552 WP_152510839.1 single-stranded DNA-binding protein Machinery gene
  FIV05_RS20905 (FIV05_21210) uvrA 4534804..4537734 (+) 2931 WP_152510840.1 excinuclease ABC subunit UvrA -
  FIV05_RS20910 (FIV05_21215) - 4537979..4538128 (+) 150 WP_006933294.1 DUF1127 domain-containing protein -
  FIV05_RS20915 (FIV05_21225) - 4538959..4539108 (+) 150 WP_006933293.1 DUF1127 domain-containing protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 18939.57 Da        Isoelectric Point: 5.2868

>NTDB_id=393473 FIV05_RS20900 WP_152510839.1 4533668..4534219(-) (ssb) [Labrenzia sp. THAF191a]
MAGSVNKVILVGNLGADPEIRRTQDGRPIANLRIATSESWRDRNTGERREKTEWHRVVIFNDGLCKVAEQYLRKGSKVYL
EGQLQTRKWQDQSGQDRYSTEIVLQGFNSNLTMLDGRGEGGGASGGLPDYGNDSQGGGGGFGGGGSGSGGNFGGGYGGGS
SSGGGYGGPSGGGGGPMDDEIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=393473 FIV05_RS20900 WP_152510839.1 4533668..4534219(-) (ssb) [Labrenzia sp. THAF191a]
ATGGCGGGCAGCGTCAACAAAGTAATTTTGGTCGGCAATCTGGGAGCAGACCCGGAAATCCGCCGTACGCAGGATGGCCG
CCCGATCGCCAATCTCCGGATTGCGACGTCGGAATCCTGGCGCGACCGAAACACCGGTGAGCGCCGAGAAAAGACGGAGT
GGCACCGTGTCGTGATCTTCAACGACGGTCTTTGCAAAGTTGCGGAGCAATACCTGCGCAAGGGATCAAAGGTTTATCTC
GAAGGCCAGCTTCAGACCCGCAAATGGCAGGATCAGTCCGGTCAGGACCGGTACTCCACCGAGATCGTGCTGCAGGGCTT
CAACTCCAACCTGACCATGCTTGACGGCCGCGGCGAAGGTGGCGGTGCATCCGGCGGTCTTCCCGATTACGGCAATGACT
CACAAGGCGGCGGAGGTGGCTTCGGCGGCGGTGGTTCCGGTTCCGGTGGGAATTTCGGTGGTGGCTACGGCGGCGGATCC
AGCAGCGGTGGCGGTTACGGCGGTCCGTCCGGCGGCGGTGGCGGCCCCATGGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.485

100

0.525
  ssb Vibrio cholerae strain A1552

64.8

68.306

0.443
  ssb Neisseria meningitidis MC58

36.667

98.361

0.361
  ssb Neisseria gonorrhoeae MS11

36.667

98.361

0.361

Multiple sequence alignment