Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   FIV08_RS18450 Genome accession   NZ_CP045324
Coordinates   3997316..3997708 (+) Length   130 a.a.
NCBI ID   WP_044388924.1    Uniprot ID   -
Organism   Marinobacter sp. THAF197a     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3992316..4002708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV08_RS18420 (FIV08_18600) - 3992597..3993616 (-) 1020 WP_061331960.1 aspartate carbamoyltransferase catalytic subunit -
  FIV08_RS18425 (FIV08_18605) pyrR 3993642..3994151 (-) 510 WP_152439391.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  FIV08_RS18430 (FIV08_18610) ruvX 3994171..3994602 (-) 432 WP_061331962.1 Holliday junction resolvase RuvX -
  FIV08_RS18435 (FIV08_18615) - 3994595..3995161 (-) 567 WP_152439392.1 YqgE/AlgH family protein -
  FIV08_RS18440 (FIV08_18620) - 3995158..3996024 (-) 867 WP_152439393.1 energy transducer TonB -
  FIV08_RS18445 (FIV08_18625) gshB 3996071..3997024 (-) 954 WP_152439394.1 glutathione synthase -
  FIV08_RS18450 (FIV08_18630) pilG 3997316..3997708 (+) 393 WP_044388924.1 twitching motility response regulator PilG Regulator
  FIV08_RS18455 (FIV08_18635) pilH 3997741..3998103 (+) 363 WP_011787171.1 twitching motility response regulator PilH -
  FIV08_RS18460 (FIV08_18640) - 3998124..3998669 (+) 546 WP_152439395.1 chemotaxis protein CheW -
  FIV08_RS18465 (FIV08_18645) - 3998764..4000839 (+) 2076 WP_172972302.1 methyl-accepting chemotaxis protein -
  FIV08_RS18470 (FIV08_18650) - 4000867..4001766 (+) 900 WP_152439396.1 CheR family methyltransferase -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14594.87 Da        Isoelectric Point: 6.3282

>NTDB_id=393457 FIV08_RS18450 WP_044388924.1 3997316..3997708(+) (pilG) [Marinobacter sp. THAF197a]
MDDNFENLKIMVIDDSKTIRRTAETLLKKVGCEVITATDGFDALAKIADSQPDIIFVDIMMPRLDGYQTCALIKNNSSFK
KTPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKDELLNTIRQYVPQAQQ

Nucleotide


Download         Length: 393 bp        

>NTDB_id=393457 FIV08_RS18450 WP_044388924.1 3997316..3997708(+) (pilG) [Marinobacter sp. THAF197a]
ATGGATGACAACTTCGAGAATCTGAAGATCATGGTGATTGACGACAGCAAGACCATTCGTCGCACCGCAGAAACCCTTCT
CAAAAAGGTCGGTTGTGAGGTCATCACCGCCACTGACGGCTTTGACGCTCTGGCCAAGATTGCCGATTCCCAGCCGGACA
TCATTTTTGTTGATATCATGATGCCCCGACTGGATGGCTACCAGACCTGCGCACTTATCAAGAACAATTCCTCTTTCAAA
AAGACGCCGGTTATCATGCTCTCGAGCAAGGACGGCCTTTTCGACAAGGCAAAAGGCCGAATCGTTGGCTCGGACCAGTA
TCTGACCAAACCGTTCAGCAAGGATGAACTGCTTAATACTATTCGCCAGTACGTCCCACAGGCGCAACAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

78.4

96.154

0.754
  vicR Streptococcus mutans UA159

40.984

93.846

0.385
  micA Streptococcus pneumoniae Cp1015

40.496

93.077

0.377
  pilH Synechocystis sp. PCC 6803

40.517

89.231

0.362

Multiple sequence alignment